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colon
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3.8k
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ComBat
Transcription
Genetics
Pathways
Network
Survival
Cancer
Breast
Colon
Kidney
Leukemia
HIV
11.5 years ago
SSc Array Core
▴ 10
0
votes
1
reply
1.7k
views
Some problems in combining ExpressionSet objects with the combine() function
Microarray
Cancer
Colon
limma
Microarray
Cancer
Colon
limma
updated 12.8 years ago by
James W. MacDonald
65k • written 12.8 years ago by
Manuela Di Russo
▴ 70
0
votes
6
replies
1.6k
views
help in 2-color data normalization
Normalization
Cancer
Colon
Normalization
Cancer
Colon
updated 17.0 years ago by
Jeremy Davis-Turak
▴ 50 • written 17.0 years ago by
Jianping Jin
▴ 890
0
votes
2
replies
1.5k
views
inSilicoMerging and Limma
Colon
hgu133a2
hgu133plus2
limma
inSilicoMerging
Colon
hgu133a2
hgu133plus2
limma
10.9 years ago
Ed Siefker
▴ 230
0
votes
0
replies
1.4k
views
Package announcement: bsseq
Sequencing
Alignment
Cancer
Colon
bsseq
Sequencing
Alignment
Cancer
Colon
bsseq
11.7 years ago
Kasper Daniel Hansen
★ 6.5k
0
votes
3
replies
1.3k
views
contrasts.fit Error
Microarray
Colon
limma
Microarray
Colon
limma
updated 19.6 years ago by
Gordon Smyth
50k • written 19.6 years ago by
Matt McCall
▴ 50
0
votes
0
replies
1.2k
views
Some problems in combining ExpressionSet objects with the combine() function
Microarray
GO
Cancer
Colon
affy
limma
Microarray
GO
Cancer
Colon
affy
limma
12.8 years ago
James W. MacDonald
65k
0
votes
0
replies
1.2k
views
Simple beadarraySNP analysis
SNP
Normalization
Cancer
Colon
PROcess
beadarraySNP
copynumber
SNP
Normalization
Cancer
14.9 years ago
Dmitri Mouradov
▴ 20
0
votes
1
reply
1.1k
views
What preprocessing needs to be done on the Experiment datasets
colon
rstudio
golubesets
updated 8.1 years ago by
James W. MacDonald
65k • written 8.1 years ago by
shramanathakur
• 0
0
votes
0
replies
872
views
Illumina 610 Quad SNP chips
SNP
Cancer
Colon
SNP
Cancer
Colon
14.8 years ago
Dmitri Mouradov
▴ 20
0
votes
1
reply
605
views
help with matrix
Colon
Colon
updated 14.2 years ago by
James W. MacDonald
65k • written 14.2 years ago by
Alberto Goldoni
▴ 420
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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