Showing : colon • reset
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ComBat
Transcription Genetics Pathways Network Survival Cancer Breast Colon Kidney Leukemia HIV
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Some problems in combining ExpressionSet objects with the combine() function
Microarray Cancer Colon limma Microarray Cancer Colon limma
updated 12.7 years ago by 65k • written 12.7 years ago by ▴ 70
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help in 2-color data normalization
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updated 16.9 years ago by ▴ 50 • written 17.0 years ago by ▴ 890
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inSilicoMerging and Limma
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10.9 years ago Ed Siefker ▴ 230
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Package announcement: bsseq
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11.7 years ago Kasper Daniel Hansen ★ 6.5k
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contrasts.fit Error
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updated 19.6 years ago by 50k • written 19.6 years ago by ▴ 50
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Some problems in combining ExpressionSet objects with the combine() function
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What preprocessing needs to be done on the Experiment datasets
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updated 8.1 years ago by 65k • written 8.1 years ago by • 0
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Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by sredemption • 0
Try library(enrichplot) dotplot(gsea_FS, showCategory=10, split=".sign") + facet_grid(.~.sign)
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How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
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