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color
•
reset
0
votes
0
replies
666
views
Gviz: set colors for UTRs
plot
color
Gviz
utr
3.0 years ago
ginlucks
• 0
0
votes
3
replies
1.5k
views
Change color of Diffbind's PCA and clustered heatmap plot()
DiffBind
plot
color
updated 4.2 years ago by
Rory Stark
★ 5.1k • written 4.4 years ago by
melnuesch
▴ 10
0
votes
4
replies
6.8k
views
Limma Volcano Plot Highlight Top Genes by Color
limma
microarray
volcanoplot
color
updated 5.5 years ago by
Gordon Smyth
50k • written 5.5 years ago by
dmm204
• 0
0
votes
2
replies
1.8k
views
Controlling colours assigned to order in DeSeq2 plot in phyloseq
phyloseq
color
ggplot2
updated 7.1 years ago by
Michael Love
41k • written 7.1 years ago by
sarahmacdonald86
• 0
1
vote
2
replies
1.2k
views
How can I set custom colors in DiffBind using dba.plotHeatmap
diffbind
color
updated 7.3 years ago by
Gord Brown
▴ 650 • written 7.3 years ago by
Gary
▴ 20
0
votes
1
reply
1.2k
views
HowTo? Provide a different fill color for each rectangle in an Gviz AnnotationTrack ?
Gviz
color
updated 7.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.7 years ago by
Malcolm Cook
★ 1.6k
0
votes
0
replies
984
views
Mixed up colors in GViz GeneRegionTrack
color
GeneRegionTrack
7.8 years ago
senanu.pearson
• 0
4
votes
2
replies
4.2k
views
DESeq2 color coding
DESeq2
color
R package
updated 7.9 years ago by
Mike Smith
★ 6.5k • written 7.9 years ago by
ChIP-Tease
• 0
2
votes
3
replies
2.2k
views
No color support in ggbio for autoplot
ggbio
autoplot
color
vignette
updated 8.2 years ago by
aaron
▴ 10 • written 8.2 years ago by
timothypyork
• 0
9 results • Page
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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Robert Castelo
★ 3.2k
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James W. MacDonald
65k
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shepherl
3.8k
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▴ 30
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Gordon Smyth
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