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News:
BioC2024 registration is now open!
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7 weeks ago
Maria Doyle
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8 months ago
Maria Doyle
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Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
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11 months ago
Maria Doyle
▴ 70
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RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
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11 months ago
Maria Doyle
▴ 70
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Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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12 months ago
Maria Doyle
▴ 70
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Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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12 months ago
Maria Doyle
▴ 70
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News:
EuroBioC2023 abstract submission closing soon!
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12 months ago
Maria Doyle
▴ 70
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written 14 months ago by
Maria Doyle
▴ 70
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News:
EuroBioC2023 abstract submission is open!
presentation
EuroBioC2023
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14 months ago
Maria Doyle
▴ 70
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465
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Bioconductor call for events!
Bioconductor
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14 months ago
Maria Doyle
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Join the Community Advisory Board -- upcoming elections -- deadline Today
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bioconductoroversight
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written 16 months ago by
shepherl
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15 months ago
Maria Doyle
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Maria Doyle
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22 months ago
kozo.nishida
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Bioconductor
23 months ago • updated 22 months ago
Matthew Ritchie
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bioconductoroversight
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2.2 years ago
shepherl
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2.3 years ago • updated 2.2 years ago
shepherl
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2.8 years ago
shepherl
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Bioconductor
3.0 years ago
Charlotte Soneson
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3.0 years ago
shepherl
3.8k
2
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BiocVersion
3.1 years ago
Matthew Ritchie
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4
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4.1 years ago
Matthew Ritchie
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7
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21k • written 4.2 years ago by
Matthew Ritchie
▴ 1000
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4.2 years ago
Matthew Ritchie
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3
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4.6 years ago
Matthew Ritchie
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27 results • Page
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Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
James W. MacDonald
65k
You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Votes
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
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