Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
complex-design
•
reset
3
votes
4
replies
1.1k
views
Complicated unbalanced block DOE with partially paired samples and analysis
limma
complex-design
paired design
updated 6.0 years ago by
Aaron Lun
★ 28k • written 6.0 years ago by
ML18
▴ 10
0
votes
5
replies
2.2k
views
getting sample size for RNAseq experiment
rnaseqpower
sspa
sample size
sequencing
complex-design
updated 8.1 years ago by
m.van_iterson
▴ 20 • written 8.1 years ago by
roser.navarro
• 0
9
votes
21
replies
5.2k
views
limma - complex design with paired samples, sex and batch effect
limma
paired samples
complex-design
8.3 years ago • updated 8.2 years ago
aec
▴ 90
7
votes
6
replies
3.9k
views
Design and contrast question limma (additive or nested or duplicateCorrelation())??
limma
model matrix
limma design matrix
complex-design
updated 8.8 years ago by
Aaron Lun
★ 28k • written 8.8 years ago by
Guido Hooiveld
★ 3.9k
1
vote
1
reply
2.9k
views
Factorial Design with DESeq2; contrast problem.
deseq2
multiple factor design
complex-design
updated 9.1 years ago by
Michael Love
41k • written 9.1 years ago by
sifujio
• 0
1
vote
3
replies
6.5k
views
Combat - error - system is computationally singular
combat
software error
rnaseq
complex-design
updated 9.5 years ago by
Peter Langfelder
★ 2.9k • written 9.5 years ago by
Stefano Mangiola
▴ 10
7
votes
11
replies
2.2k
views
Using edgeR on pre-post treatment control design
edgeR
complex-design
updated 9.5 years ago by
James W. MacDonald
65k • written 9.5 years ago by
lwc628
▴ 20
7 results • Page
1 of 1
Recent ...
Replies
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Awards
• All
Popular Question
to
michael.s
• 0
Popular Question
to
James W. MacDonald
65k
Popular Question
to
Pierre Lindenbaum
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Jenny Drnevich
★ 2.0k
Locations
• All
Austria,
just now
United Kingdom,
5 minutes ago
United States,
57 minutes ago
United States,
59 minutes ago
UPF, Barcelona, Spain,
1 hour ago
Traffic: 544 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6