Showing : complexHeatmap • reset
2
votes
3
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178
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ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with variable number of continuous columns
ComplexHeatmap
1 day ago • updated 8 hours ago daniel.carbajo • 0
2
votes
2
replies
106
views
ComplexHeatmap: change the names of a HeatmapAnnotation object
ComplexHeatmap
4 days ago • updated 1 day ago daniel.carbajo • 0
2
votes
2
replies
281
views
ComplexHeatmap crashing R session
ComplexHeatmap
9 weeks ago Felipe • 0
2
votes
3
replies
932
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 14 months ago by ▴ 40 • written 14 months ago by ▴ 10
3
votes
4
replies
2.8k
views
ComplexHeatmap - Default distance and hierarchical clustering methods
ComplexHeatmap Complex
updated 14 months ago by ▴ 40 • written 14 months ago by • 0
2
votes
5
replies
1.5k
views
ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
16 months ago Katharina • 0
0
votes
1
reply
1.4k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 19 months ago by ▴ 260 • written 20 months ago by • 0
0
votes
0
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906
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Boxplot annotation per cluster and column using ComplexHeatmap
ComplexHeatmap
20 months ago gdeniz • 0
2
votes
2
replies
2.1k
views
ComplexHeatmap: Change font size of annotation axis values
ComplexHeatmap
updated 8 months ago by • 0 • written 21 months ago by ▴ 10
3
votes
3
replies
3.0k
views
ComplexHeatmap install error
ComplexHeatmap
updated 22 months ago by 65k • written 22 months ago by ▴ 10
2
votes
3
replies
2.2k
views
Complexheatmap row-names not showing up
ComplexHeatmap
22 months ago krushnach80 • 0
1
vote
1
reply
2.0k
views
ComplexHeatmap: Not able to change the annotations size of the heatmap
ComplexHeatmap Anno Annotation
updated 2.6 years ago by ▴ 260 • written 2.6 years ago by ▴ 10
1
vote
0
replies
1.0k
views
ComplexHeatmap: Swapping between left_annotation and right_annotation results in a blank space
anno_block ComplexHeatmap left_annotation right_annotation
2.8 years ago glich • 0
2
votes
5
replies
3.2k
views
News: New in DiffBind 3.2: dba.plotProfile() - Peak profiles and profile heatmaps
profileplyr ATACSeq DiffBind ComplexHeatmap ChIPSeq
updated 16 months ago by • 0 • written 2.9 years ago by ★ 5.1k
3
votes
2
replies
2.0k
views
Complex Heatmap shows just one color
Heatmap ComplexHeatmap colorRamp
3.0 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
2.0k
views
ComplexHeatmap: setting column_order changes plotted values
ComplexHeatmap
3.1 years ago vanbelj ▴ 30
2
votes
4
replies
5.9k
views
Complexheatmap Installation Issue
ComplexHeatmap
3.3 years ago legro.melanie • 0
0
votes
0
replies
630
views
How to show rownames in densityheatmaps
ComplexHeatmap
3.4 years ago adR ▴ 30
0
votes
2
replies
1.1k
views
K Means Clustering Two Matrices for ComplexHeatmap
complexheatmap R
3.6 years ago pthom010 • 0
0
votes
2
replies
11k
views
ComplexHeatmap - how to change the position of the legend of rowAnnotation
ComplexHeatmap
updated 3.8 years ago by ▴ 260 • written 3.8 years ago by • 0
1
vote
6
replies
9.7k
views
Change fontsize/remove name of annotation ComplexHeatmap package
r rnaseq complexHeatmap annotation
updated 3.8 years ago by ▴ 260 • written 3.8 years ago by ▴ 10
0
votes
1
reply
1.4k
views
ComplexHeatmap's UpSet plots: how to convert a binary matrix into a list of sets
ComplexHeatmap UpSet
3.9 years ago moldach ▴ 20
3
votes
2
replies
2.1k
views
Clustering differentially expressed genes in response to multiple treatments (using edgeR)
edger complexheatmap R clustering
updated 4.0 years ago by 50k • written 4.0 years ago by • 0
0
votes
6
replies
4.6k
views
Error: node stack overflow when trying to plot large dataset using Complexheatmap
Complexheatmap
updated 4.6 years ago by ▴ 260 • written 4.6 years ago by ▴ 110
3
votes
7
replies
3.1k
views
Handle missing values in the z-score matrix while plotting heatmap in the ComplexHeatmap
matrix heatmap ComplexHeatmap missing values R
updated 4.6 years ago by ▴ 260 • written 4.6 years ago by ▴ 10
3
votes
2
replies
6.7k
views
ComplexHeatmap removes row labels if annotation is added
annotation show_row_names complexheatmap
4.7 years ago alexw858 • 0
0
votes
1
reply
796
views
ComplexHeatmap : can't find the arguments inherited from the previous version
ComplexHeatmap
updated 4.9 years ago by ▴ 260 • written 4.9 years ago by ▴ 20
4
votes
3
replies
2.8k
views
Align legends to each heatmap in a ComplexHeatmap with 2 heatmaps
complexheatmap r
updated 4.9 years ago by ▴ 260 • written 4.9 years ago by ▴ 190
0
votes
1
reply
2.2k
views
ComplexHeatmap package will not display heatmaps
ComplexHeatmap software error
updated 5.0 years ago by 65k • written 5.0 years ago by • 0
2
votes
1
reply
3.8k
views
Make UpSet function display numbers above the bars
ComplexHeatmap
updated 5.1 years ago by ▴ 260 • written 5.1 years ago by ▴ 40
0
votes
1
reply
1.2k
views
Error with ComplexHeatmap. Showing only part of image.
Complexheatmap
5.1 years ago Goku • 0
0
votes
2
replies
1.6k
views
ComplexHeatmap column dendrogram
complexheatmap
updated 6.1 years ago by ▴ 200 • written 6.1 years ago by 65k
5
votes
12
replies
10k
views
Combining ComplexHeatmap with other plot types
complexheatmap ggplot2
updated 6.4 years ago by ▴ 260 • written 6.4 years ago by ▴ 10
1
vote
5
replies
8.7k
views
How to add both row and column labels to Complexheatmap
complexheatmap labels
6.6 years ago dilawerkh4 • 0
0
votes
0
replies
1.5k
views
Problem with heatmap by ComplexHeatmap
complexheatmap Rstudio NOISeq
6.6 years ago Luiz • 0
0
votes
1
reply
1.8k
views
about using the names of the rows and columns in ComplexHeatmap
complexheatmap
6.6 years ago Bogdan ▴ 670
3
votes
2
replies
4.3k
views
Automatic color assignment for annotations on ComplexHeatmap
complexheatmap
6.6 years ago CodeAway ▴ 70
0
votes
0
replies
1.2k
views
Changing row height in ComplexHeatmap
complexheatmap
updated 6.6 years ago by 50k • written 6.6 years ago by • 0
2
votes
3
replies
2.1k
views
about MAFTOOLS and ComplexHeatmap
complexheatmap maftools
updated 6.7 years ago by ▴ 90 • written 6.7 years ago by ▴ 670
0
votes
2
replies
1.7k
views
Extracting subclusters from original data
complexheatmap metabolomics
updated 6.7 years ago by ▴ 130 • written 6.7 years ago by • 0
1
vote
2
replies
2.3k
views
legend with gradient in ComplexHeatmap
complexheatmap
6.8 years ago AR3513 • 0
2
votes
2
replies
1.3k
views
about reshaping a data frame
maftools complexheatmap
updated 6.8 years ago by ▴ 110 • written 6.8 years ago by ▴ 670
0
votes
1
reply
1.5k
views
Oncoprint function in ComplexHeatmap
complexheatmap
6.9 years ago Bogdan ▴ 670
0
votes
5
replies
2.0k
views
Problem trying to decorate a heatmap inside a function
complexheatmap
7.0 years ago AR3513 • 0
0
votes
1
reply
1.1k
views
Error in Heatmap...
complexheatmap
7.1 years ago baranikumar22 • 0
8
votes
1
reply
9.2k
views
extracting the genes associated with the clusters
heatmap.2 pheatmap complexheatmap heatplus
updated 7.1 years ago by ▴ 680 • written 7.1 years ago by ▴ 670
0
votes
1
reply
1.1k
views
Drawing a HeatMapList while retaining the original row order of each heat map
complexheatmap
updated 7.1 years ago by ★ 13k • written 7.1 years ago by ▴ 150
1
vote
2
replies
1.9k
views
Error when using multiple heatmaps in ComplexHeatmaps
ComplexHeatmap bug
7.2 years ago brt381 • 0
2
votes
1
reply
3.4k
views
Assign custom dendrogram to ComplexHeatmap Heatmap object
complexheatmap heatmap.2 dendrogram dendextend heatmap
updated 7.5 years ago by ▴ 200 • written 7.5 years ago by ▴ 660
0
votes
1
reply
1.5k
views
How to manage multiple legends in heatmap_legend_param (ComplexHeatmap) ?
ComplexHeatmap complexheatmap
7.6 years ago g.atla ▴ 10
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Comment: what is the sampleFiles by James W. MacDonald 65k
I don't see any sampleFiles argument for any function in that package. Ideally you would at least tell us what function you are using.
Comment: Interaction Terms in DESeq2 - Shrinkage by Michael Love 41k
Yes, apeglm requires relevel and nbinomWaldTest to generate the coefficient estimate and its SE. Alternatively you can use ashr with a con…
Comment: A ComBat-seq issue: the covariates are confounded by schlumbohm • 0
Dear ATpoint, thank you for the comment. I did correct the question. For the group, I did accidentally share the input for all three batch…
Comment: Memory errors using read.bismark? by Peter Hickey ▴ 690
If you process serially (i.e. with `BPPARAM = SerialParam()`) then you might be okay. The final object will be on the order of 250 GB in-me…
Comment: Memory errors using read.bismark? by Juan Higareda • 0
Thanks for the answer. Actually, processing one file and keeping it in memory wasn't the problem, is more processing all the 15 files to bu…
Votes
Comment: Not fully paired differential gene expression analysis
Comment: [DiffBind] Obtaining normalization factors
Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var
Comment: Not fully paired differential gene expression analysis
Answer: GSVA error
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