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News:
Call for proposals: European CarpentryConnect - 12-14 November 2024, at EMBL Heidelberg
carpentry
conference
17 days ago
Wolfgang Huber
★ 13k
0
votes
0
replies
127
views
News:
Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024
Conference
Bioconductor
4 weeks ago
Maria Doyle
▴ 70
0
votes
0
replies
156
views
News:
BioC2024 registration is now open!
BioC2024
Conference
Bioconductor
Community
7 weeks ago
Maria Doyle
▴ 70
0
votes
1
reply
284
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News:
BioC2024 abstract submission is open!
BioC2024
Conference
Bioconductor
updated 5 weeks ago by
howell
• 0 • written 9 weeks ago by
Maria Doyle
▴ 70
0
votes
0
replies
156
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
10 weeks ago
Maria Doyle
▴ 70
0
votes
0
replies
381
views
News:
EMBO|EMBL Conference "AI and Biology"
EMBL
Heidelberg
AI
Conference
5 months ago
Wolfgang Huber
★ 13k
1
vote
0
replies
589
views
News:
News: BioCAsia2023 Abstract Submission & Registration Now Open!
Events
BioCAsia
Conference
7 months ago
Maria Doyle
▴ 70
0
votes
0
replies
434
views
News:
Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor
BioC2023
Conference
9 months ago
Maria Doyle
▴ 70
0
votes
1
reply
1.2k
views
News:
BioC2023 abstract submission is now open!
presentation
BioC2023
Conference
community
Bioconductor
written 14 months ago by
Maria Doyle
▴ 70
0
votes
3
replies
1.1k
views
News:
European Bioconductor Conference 2023 planning
Europe
Conference
EuroBioC
Events
News
updated 3 days ago by
lauryfriese932
• 0 • written 18 months ago by
Maria Doyle
▴ 70
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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