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News:
Call for proposals: European CarpentryConnect - 12-14 November 2024, at EMBL Heidelberg
carpentry
conference
9 days ago
Wolfgang Huber
★ 13k
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News:
Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024
Conference
Bioconductor
26 days ago
Maria Doyle
▴ 70
0
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147
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News:
BioC2024 registration is now open!
BioC2024
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Bioconductor
Community
6 weeks ago
Maria Doyle
▴ 70
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News:
BioC2024 abstract submission is open!
BioC2024
Conference
Bioconductor
updated 29 days ago by
howell
• 0 • written 8 weeks ago by
Maria Doyle
▴ 70
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News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
9 weeks ago
Maria Doyle
▴ 70
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News:
EMBO|EMBL Conference "AI and Biology"
EMBL
Heidelberg
AI
Conference
5 months ago
Wolfgang Huber
★ 13k
1
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News:
News: BioCAsia2023 Abstract Submission & Registration Now Open!
Events
BioCAsia
Conference
7 months ago
Maria Doyle
▴ 70
0
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0
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428
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News:
Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor
BioC2023
Conference
9 months ago
Maria Doyle
▴ 70
0
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0
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499
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News:
EuroBioC2023 abstract submission closing soon!
presentation
EuroBioc2023
Conference
community
Bioconductor
12 months ago
Maria Doyle
▴ 70
0
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1.2k
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News:
BioC2023 abstract submission is now open!
presentation
BioC2023
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community
Bioconductor
written 14 months ago by
Maria Doyle
▴ 70
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News:
European Bioconductor Conference 2023 planning
Europe
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EuroBioC
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updated 29 days ago by
william
• 0 • written 18 months ago by
Maria Doyle
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Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures
by
Gordon Smyth
50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
• 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
Comment: Single-Cell Data Simulation from Bulk RNA-seq
by
wichaidi
• 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
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Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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