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News: Call for proposals: European CarpentryConnect - 12-14 November 2024, at EMBL Heidelberg
carpentry conference
9 days ago Wolfgang Huber ★ 13k
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News: Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024 Conference Bioconductor
26 days ago Maria Doyle ▴ 70
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News: BioC2024 registration is now open!
BioC2024 Conference Bioconductor Community
6 weeks ago Maria Doyle ▴ 70
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News: BioC2024 abstract submission is open!
BioC2024 Conference Bioconductor
updated 29 days ago by • 0 • written 8 weeks ago by ▴ 70
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News: EuroBioC2024 abstract submission is open!
Conference Bioconductor EuroBioC2024
9 weeks ago Maria Doyle ▴ 70
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News: EMBO|EMBL Conference "AI and Biology"
EMBL Heidelberg AI Conference
5 months ago Wolfgang Huber ★ 13k
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News: News: BioCAsia2023 Abstract Submission & Registration Now Open!
Events BioCAsia Conference
7 months ago Maria Doyle ▴ 70
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News: Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor BioC2023 Conference
9 months ago Maria Doyle ▴ 70
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News: EuroBioC2023 abstract submission closing soon!
presentation EuroBioc2023 Conference community Bioconductor
12 months ago Maria Doyle ▴ 70
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News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
written 14 months ago by ▴ 70
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News: European Bioconductor Conference 2023 planning
Europe Conference EuroBioC Events News
updated 29 days ago by • 0 • written 18 months ago by ▴ 70
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Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures by Gordon Smyth 50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
Comment: Single-Cell Data Simulation from Bulk RNA-seq by wichaidi • 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
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Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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