6.5 years ago
zeb
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Comment: DeSEQ 2 Error: some values in assay are negative
by
James W. MacDonald
63k
In order to back up your assertion that there are no negative values, you should provide evidence. For example
```
any(countData < 0)
dds …
Answer: DeSEQ 2 Error: some values in assay are negative
by
Michael Love
40k
You don't need to remove 0's.
What do you get with
```
any(countData < 0)
```
(fixed, typo first time around)
Comment: Interpret plot from DiffBind
by
Rory Stark
★
4.9k
See above, you want the sites where `Fold > 0`.
Comment: Interpret plot from DiffBind
by
Rory Stark
★
4.9k
That does seem like you have a very high number of open chromatin sites changing. How many are in the consensus matrix?
You can see how ma…
Comment: Interpret plot from DiffBind
by
Rory Stark
★
4.9k
I can see the confusion here as one color is being used in two different ways.
The dark blue/purple color is used for the bars on the left…
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