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confounding
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1
vote
6
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1.9k
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adjusting for confounding effects in edgeR
edger
confounding
updated 4.8 years ago by
Aaron Lun
★ 28k • written 4.8 years ago by
Victoria
• 0
0
votes
0
replies
1.1k
views
Possible confounding of variable of interest with batch covariate and Partial NA coefficients when including batch in limma linear model for microarr…
limma
batch effect
design matrix
microarray
confounding
6.9 years ago
svlachavas
▴ 830
8
votes
3
replies
2.6k
views
[Limma] Testing continuous variable with interaction
limma
voom
continuous
interactions
confounding
7.5 years ago
lanhuong
▴ 20
1
vote
9
replies
3.6k
views
LIMMA for paired analysis with adjustment for confounding continuous variables
limma
gene expression
confounding
adjustment
paired
8.4 years ago
Loodramon
• 0
0
votes
4
replies
1.6k
views
Use of confounders in downstream analysis
limma
GSA
confounding
within-pair analysis
450k
8.9 years ago
Aileen Bahl
▴ 10
5 results • Page
1 of 1
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Answer: Merging featureCounts output for different species
by
Michael Love
41k
Bioconductor support site is for posting questions about software. Try biostars.
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
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Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
Answer: Microarray Limma Model fitting and DEG
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