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confounding
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9
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LIMMA for paired analysis with adjustment for confounding continuous variables
limma
gene expression
confounding
adjustment
paired
8.4 years ago
Loodramon
• 0
1
vote
6
replies
1.9k
views
adjusting for confounding effects in edgeR
edger
confounding
updated 4.8 years ago by
Aaron Lun
★ 28k • written 4.8 years ago by
Victoria
• 0
0
votes
4
replies
1.6k
views
Use of confounders in downstream analysis
limma
GSA
confounding
within-pair analysis
450k
8.9 years ago
Aileen Bahl
▴ 10
8
votes
3
replies
2.6k
views
[Limma] Testing continuous variable with interaction
limma
voom
continuous
interactions
confounding
7.5 years ago
lanhuong
▴ 20
0
votes
0
replies
1.1k
views
Possible confounding of variable of interest with batch covariate and Partial NA coefficients when including batch in limma linear model for microarr…
limma
batch effect
design matrix
microarray
confounding
6.9 years ago
svlachavas
▴ 830
5 results • Page
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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