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confounding
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9
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LIMMA for paired analysis with adjustment for confounding continuous variables
limma
gene expression
confounding
adjustment
paired
8.5 years ago
Loodramon
• 0
8
votes
3
replies
2.7k
views
[Limma] Testing continuous variable with interaction
limma
voom
continuous
interactions
confounding
7.6 years ago
lanhuong
▴ 20
1
vote
6
replies
1.9k
views
adjusting for confounding effects in edgeR
edger
confounding
updated 4.8 years ago by
Aaron Lun
★ 28k • written 4.8 years ago by
Victoria
• 0
0
votes
4
replies
1.7k
views
Use of confounders in downstream analysis
limma
GSA
confounding
within-pair analysis
450k
9.0 years ago
Aileen Bahl
▴ 10
0
votes
0
replies
1.1k
views
Possible confounding of variable of interest with batch covariate and Partial NA coefficients when including batch in limma linear model for microarr…
limma
batch effect
design matrix
microarray
confounding
7.0 years ago
svlachavas
▴ 830
5 results • Page
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Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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