Bioconductor Consensusclusterplus

Showing : consensusclusterplus • reset

vote

replies

11k

views

Bioconductor ConsensusClusterPlus

updated 8 months ago by Mehdi • 0 • written 16 months ago by k.wickstrom • 0

votes

980

views

EdgeR clustering differential gene expression consensusclusterplus kmeans

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by anupriya.dalmia • 0

votes

1.2k

views

consensusclusterplus distance clustering

updated 5.1 years ago by chris86 ▴ 420 • written 5.1 years ago by neuro3030 • 0

votes

replies

254

views

ConsensusClusterPlus RNASeqData

12 weeks ago Diana • 0

vote

2.3k

views

bioconductor clustering consensusclusterplus

7.2 years ago kyn ▴ 10

votes

1.2k

views

ConsensusClusterPlus calcICL plot

7.4 years ago • updated 7.0 years ago juan-pablo.cerapio-arroyo ▴ 10

votes

replies

1.3k

views

consensusclusterplus

7.3 years ago Jane Merlevede ▴ 90

votes

replies

828

views

ConsensusClusterPlus

7.3 years ago Jane Merlevede ▴ 90

votes

replies

1.4k

views

flowsom consensusclusterplus

7.1 years ago Lukas Weber • 0

votes

replies

1.0k

views

consensusclusterplus microarray clustering

6.1 years ago aagata.szymanek • 0

votes

replies

1.2k

views

consensusclusterplus heatmap

4.7 years ago niki.nowhere • 0

votes

replies

823

views

Clustering ConsensusClusterPlus

2.6 years ago Gian ▴ 30

votes

replies

270

views

ConsensusClusterPlus

11 months ago hsin hsiung • 0

votes

replies

843

views

ConsensusClusterPlus ConsensusClusterPlus

13.9 years ago Matt Wilkerson ▴ 20

votes

replies

387

views

ConsensusClusterPlus

17 months ago William • 0

votes

replies

1.1k

views

ConsensusClusterPlus ConsensusClusterPlus

12.9 years ago Matt Wilkerson ▴ 20

votes

replies

1.5k

views

Clustering ConsensusClusterPlus Clustering ConsensusClusterPlus

11.0 years ago Matthew D. Wilkerson ▴ 20

votes

replies

2.0k

views

consensusclusterplus clustering

8.5 years ago philipp24 ▴ 30

votes

1.6k

views

bioconductor consensusclusterplus clustering

7.5 years ago afraTW • 0

19 results • Page 1 of 1

Recent ...

Replies

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…

Comment: PCA plot suggestions by JKim • 0

cross post: https://www.biostars.org/p/9593486/

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…

Votes

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0