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Showing :
continuous
•
reset
3
votes
12
replies
1.6k
views
Why did I get NA p-values in DESeq with continuous variable?
deseq2
p-value
continuous
deseq
5.1 years ago
ariel
▴ 20
3
votes
7
replies
1.5k
views
single continuous factor
edger
design matrix
continuous
updated 2.1 years ago by
Tongjun
• 0 • written 5.9 years ago by
ashley.lu
• 0
8
votes
3
replies
2.6k
views
[Limma] Testing continuous variable with interaction
limma
voom
continuous
interactions
confounding
7.5 years ago
lanhuong
▴ 20
6
votes
3
replies
5.4k
views
Calculating contrasts for continuous variable anad interaction effect in Limma
limma design matrix
design and contrast matrix
continuous
interactions
updated 8.4 years ago by
Aaron Lun
★ 28k • written 8.4 years ago by
jaison75
▴ 20
1
vote
2
replies
1.3k
views
WGCNA - confounding effect based on technical variables (some continuous)
WGCNA
batch effect
continuous
updated 5.1 years ago by
Peter Langfelder
★ 2.9k • written 5.1 years ago by
cats_dogs
▴ 20
13
votes
2
replies
6.4k
views
Using limma when continuous and categorical confounders are present at the same time (e.g.age, gender)
limma
covariate
continuous
categorical
adjustment
updated 8.7 years ago by
Gordon Smyth
50k • written 8.7 years ago by
sg45653
• 0
1
vote
2
replies
1.9k
views
RUVSEq and VSD integration
deseq2
ruvseq
covariates
continuous
vsd
updated 8.0 years ago by
Michael Love
41k • written 8.0 years ago by
Mattia
▴ 10
1
vote
2
replies
1.4k
views
metagenomeSeq for continuous phenotype
metagenomeseq
continuous
limma
7.7 years ago
pjgalli2
• 0
1
vote
2
replies
756
views
EdgeR -- differentially expressed genes across a continuous variable
edger
continuous
regression
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
emb13
• 0
0
votes
1
reply
1.1k
views
Analyzing a continuous phenotype using DESeq2
DESeq2
continuous
7.7 years ago
pjgalli2
• 0
0
votes
1
reply
525
views
DESeq2 with 2 continuous factors, LRT, coeficients and slope
DESeq2
LRT
continuous
coeficients
updated 14 months ago by
Michael Love
41k • written 14 months ago by
Laia
▴ 10
0
votes
1
reply
713
views
Isolate contrasts in DESeq2 while using a combination of categorical and continuous variables
Contrast
design
DESeq2
continuous
updated 2.3 years ago by
Michael Love
41k • written 2.3 years ago by
tiansy
• 0
12 results • Page
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Recent ...
Replies
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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