Bioconductor Contrasts

Showing : contrasts • reset

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276

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design edgeR contrasts

updated 5 weeks ago by Gordon Smyth 50k • written 5 weeks ago by JKim • 0

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638

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MultipleComparison DESeq2 Genetics contrasts RNASeq

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by a26fd14e • 0

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552

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contrasts DESeq2

10 months ago jovel_juan ▴ 30

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978

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edgeR contrasts limma design model.matrix

16 months ago mohammedtoufiq91 ▴ 10

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656

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limma F-statistic contrasts

updated 17 months ago by Gordon Smyth 50k • written 17 months ago by jeltje.van.baren • 0

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3.3k

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DifferentialExpression contrasts interaction DESeq2

written 24 months ago by Nicole ▴ 10

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1.3k

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contrasts limma voom

updated 2.1 years ago by Gordon Smyth 50k • written 2.1 years ago by S T ▴ 90

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713

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DESeq2 contrasts

updated 2.2 years ago by Michael Love 41k • written 2.2 years ago by Mir • 0

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958

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topTable voom contrasts

2.7 years ago • updated 2.6 years ago James • 0

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994

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DESeq2 phyloseq contrasts

updated 2.7 years ago by Kevin Blighe ★ 3.9k • written 2.7 years ago by Mir • 0

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2.0k

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DifferentialExpression DESeq2 contrasts

2.9 years ago Jane ▴ 10

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1.2k

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edger limma contrasts DGE

updated 4.3 years ago by James W. MacDonald 65k • written 4.3 years ago by s.connell • 0

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1.0k

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deseq2 contrasts reference level

updated 4.4 years ago by Michael Love 41k • written 4.4 years ago by ananda2 • 0

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674

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edger contrasts model.matrix circadian

4.4 years ago ingerslev • 0

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1.1k

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DESeq2 RNA-Seq Multifactorial Design GLM Contrasts

updated 4.4 years ago by Michael Love 41k • written 4.4 years ago by ananda2 • 0

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1.4k

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deseq2 deseq differential expression contrasts

updated 4.4 years ago by Michael Love 41k • written 4.4 years ago by Keith Hughitt ▴ 180

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971

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limma nanostring contrasts

updated 4.6 years ago by Gordon Smyth 50k • written 4.6 years ago by uridavid.akavia • 0

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672

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deseq2 multiple factor design contrasts experimental design

updated 4.9 years ago by Michael Love 41k • written 4.9 years ago by kehoe • 0

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1.4k

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edger limma design contrasts batch

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by Pietro ▴ 40

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1.1k

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edger contrasts

updated 5.2 years ago by Gordon Smyth 50k • written 5.2 years ago by Maiv • 0

20 results • Page 1 of 1

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Replies

Comment: Methylation Analysis experiment design using Limma by hortense96 • 0

Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…

Comment: Limma design with continuous and categorical covariates by hortense96 • 0

Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …

Answer: minfi::read.metharray.exp by Basti ▴ 770

Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…

Comment: DESeq2 - dispersion estimation when there is none by WardDeb • 0

Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …

Votes

Answer: OrgDb for maize

Answer: DESeq2 - dispersion estimation when there is none

Comment: Cannabis and KEGGgraph

Answer: Cannabis and KEGGgraph

Awards • All

Scholar to Gordon Smyth 50k