Showing : convert • reset
6
votes
1
reply
2.5k
views
[ReportingTools] HTMLReport of DESeq2 results using Ensembl Gene Ids
Sequencing Annotation convert biomaRt ReportingTools DESeq2 Sequencing Annotation convert
updated 7.4 years ago by ▴ 360 • written 8.4 years ago by ▴ 160
5
votes
5
replies
1.4k
views
Metagenomic analysis: Aligning ChIPseq data on TSS
metagenomics chipseq biomart shortread convert biomaRt
7.7 years ago patrick.schordert ▴ 30
3
votes
1
reply
11k
views
convert data in to expression set
limma convert limma convert
updated 8.9 years ago by ▴ 180 • written 8.9 years ago by ▴ 80
3
votes
1
reply
2.0k
views
convert GeneSetCollection to a list
convert convert
updated 10.5 years ago by ★ 2.8k • written 10.5 years ago by ▴ 360
2
votes
2
replies
1.6k
views
Converting single GRanges object as per chromosome GRangeList
SNP GO convert SNP GO convert
updated 8.5 years ago by 13k • written 8.5 years ago by ▴ 260
2
votes
1
reply
694
views
handling 12 bit tiffs in EBImage
convert EBImage convert EBImage
updated 12.0 years ago by ▴ 310 • written 12.0 years ago by ▴ 120
2
votes
6
replies
688
views
getLDS error in scan
biomaRt getLDS convert gene symbols
updated 19 months ago by ★ 5.5k • written 19 months ago by • 0
1
vote
2
replies
1.5k
views
Apply non-Gaussian distribution data to limma
limma convert limma convert
updated 8.4 years ago by 59k • written 8.5 years ago by ★ 12k
1
vote
1
reply
909
views
converting amino-acid one letter code into cDNA sequene
convert aminoacid-onlettercode cDNA
5.9 years ago arvind90.psc • 0
1
vote
4
replies
692
views
RNA-seq analysis using R
limma rnaseq convert R
updated 3.5 years ago by 45k • written 3.5 years ago by • 0
1
vote
2
replies
2.5k
views
minfi, bumphunter + complex experimental design, and 3 other 450K queries
GO convert minfi bumphunter GO convert minfi bumphunter
updated 6.3 years ago by ▴ 20 • written 8.0 years ago by ★ 3.2k
1
vote
1
reply
1.1k
views
Error of GDS2eSet() function
convert geoquery error GDS2eSet
updated 6.4 years ago by 59k • written 6.4 years ago by • 0
1
vote
3
replies
1.6k
views
Converting to official gene symbols
convert convert
updated 13.9 years ago by ▴ 20 • written 13.9 years ago by ▴ 90
1
vote
2
replies
2.0k
views
GenBank RefSeq conversion
convert convert
updated 14.0 years ago by 21k • written 14.0 years ago by ▴ 150
1
vote
1
reply
904
views
Rsubread for paired end SOLID sequencing
Sequencing Alignment convert Rsubread Sequencing Alignment convert Rsubread
updated 8.7 years ago by ★ 3.4k • written 8.7 years ago by ▴ 50
1
vote
1
reply
2.3k
views
MethyLumiSet object
convert genoset minfi convert genoset minfi
9.1 years ago Tim Triche ★ 4.2k
1
vote
1
reply
1.7k
views
RleList
convert IRanges convert IRanges
updated 8.4 years ago by 11k • written 8.4 years ago by ▴ 20
1
vote
2
replies
10k
views
Mapping gene symbols to gene names (org.Hs.eg.db?)
convert convert
updated 8.0 years ago by 59k • written 8.0 years ago by ★ 1.1k
1
vote
7
replies
1.5k
views
Can XCMS output continuum/profile data to netCDF format?
xcms convert protein
updated 5.5 years ago by ★ 1.9k • written 5.5 years ago by • 0
1
vote
1
reply
3.3k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 4.4 years ago by ▴ 160 • written 4.4 years ago by • 0
1
vote
2
replies
1.7k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 6.2 years ago by 45k • written 6.2 years ago by • 0
1
vote
3
replies
900
views
To convert MAList to ExpressionSet using R package 'convert'
convert
updated 5.5 years ago by 45k • written 5.5 years ago by • 0
0
votes
0
replies
557
views
GenMAPP swissprot question / answers
probe convert probe convert
18.7 years ago Phguardiol@aol.com ▴ 720
0
votes
1
reply
2.0k
views
voom() vs. RPKM/FPKM or otherwise normalized counts, and GC correction, when fitting models to a small number of responses (per-feature counts)
Normalization graph limma convert edgeR DESeq Rsubread Normalization graph limma convert
updated 10.0 years ago by 45k • written 10.0 years ago by 6.5k
0
votes
3
replies
994
views
How to convert Illumina ProbeIDs to nuIDs without nuID indexed annotation libraries?
Annotation GO convert lumi Annotation GO convert lumi
updated 13.7 years ago by ★ 1.2k • written 13.7 years ago by ▴ 150
0
votes
2
replies
2.0k
views
how to convert expression set data into matrix data ?
convert convert
updated 18.8 years ago by ▴ 920 • written 18.8 years ago by ▴ 10
0
votes
0
replies
541
views
Re: how to convert expression set data into matrix data ?
convert convert
18.8 years ago Sylvia Merk ▴ 50
0
votes
0
replies
522
views
Re: Bioconductor Digest, Vol 6, Issue
gcrma convert gcrma convert
18.8 years ago Leslie Cope ▴ 50
0
votes
2
replies
535
views
multtest question
convert convert
updated 19.1 years ago by 2.3k • written 19.1 years ago by ▴ 720
0
votes
0
replies
446
views
Re: time serie data
convert convert
18.6 years ago Nicholas Lewin-Koh ▴ 430
0
votes
0
replies
546
views
Genomicfeatures chromosome names matching
Cancer TranscriptDb convert Cancer TranscriptDb convert
10.3 years ago Hervé Pagès 15k
0
votes
0
replies
465
views
Questions on getting information from affy's CEL, CDF
Cancer cdf convert Cancer cdf convert
19.2 years ago Wolfgang Huber 13k
0
votes
2
replies
1.0k
views
Importing data into Bioconductor
convert convert
19.4 years ago Fernando Henrique Ferraz P da Rosa ▴ 20
0
votes
2
replies
776
views
question subsetting expressionSet
GO convert GO convert
updated 10.4 years ago by ▴ 550 • written 10.4 years ago by ★ 3.2k
0
votes
1
reply
1.1k
views
arrayQualityMetrics - how do I use this with an MAList object???
Cancer convert arrayQualityMetrics Cancer convert arrayQualityMetrics
updated 13.7 years ago by ▴ 680 • written 13.7 years ago by 25k
0
votes
2
replies
1.2k
views
summarizing probe intensites before or after normalization- 1. how to do with RMA 2. Opinions?
Microarray Normalization Preprocessing Cancer probe affy convert affyio Microarray Cancer
15.7 years ago James W. MacDonald 59k
0
votes
3
replies
870
views
Affy : checkSlotAssignment() Error
cdf convert cdf convert
19.6 years ago Sundaram, Shyam NIH/CIT ▴ 110
0
votes
0
replies
1.6k
views
Pathview question
Network convert pathview Network convert pathview
8.1 years ago Luo Weijun ★ 1.5k
0
votes
5
replies
2.4k
views
fastq files
convert convert
updated 11.2 years ago by 25k • written 11.2 years ago by ▴ 860
0
votes
1
reply
501
views
installing affy devel package
GO affy convert GO affy convert
18.2 years ago Ben Bolstad ★ 1.1k
0
votes
0
replies
525
views
installing affy devel package
GO affy convert GO affy convert
18.2 years ago Isaac Mehl ▴ 60
0
votes
6
replies
2.2k
views
DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 8.2 years ago by 59k • written 8.2 years ago by ★ 12k
0
votes
1
reply
608
views
reading in a text file
convert convert
updated 18.2 years ago by ▴ 60 • written 18.2 years ago by ▴ 30
0
votes
1
reply
559
views
RE: venn diagram
convert convert
updated 18.1 years ago by ▴ 620 • written 18.1 years ago by ▴ 20
0
votes
0
replies
703
views
Re: affylmGUI
Genetics affylmGUI limmaGUI convert Genetics affylmGUI limmaGUI convert
18.0 years ago James Wettenhall ▴ 1000
0
votes
3
replies
1.2k
views
qvalues, sam, limma
affy limma convert affy limma convert
18.0 years ago Naomi Altman ★ 6.0k
0
votes
0
replies
824
views
Agilent microarray
Microarray Normalization convert Microarray Normalization convert
17.8 years ago s-uchida ▴ 20
0
votes
0
replies
893
views
Re: [R] How to convert a vector into a list
convert convert
17.8 years ago Adaikalavan Ramasamy ★ 1.8k
0
votes
0
replies
481
views
Annotate Package: How do I get the gene names and how do I write my matrix
Microarray Annotation Cancer annaffy convert Microarray Annotation Cancer annaffy convert
17.8 years ago James W. MacDonald 59k
0
votes
0
replies
860
views
Question about excluding Affymetrix spike controls from normalization
Normalization Bacillus subtilis convert Normalization Bacillus subtilis convert
18.3 years ago Tan, MinHan ▴ 180
50 results • Page 1 of 1
Recent ...
Replies
Comment: how to make a group to apply the data to CAMERA by Akira • 0
Thank you so much for your quick answer!! I will look into them! I appreciate your kind support.
Comment: performing the differential binding in ChIP-seq by Bogdan ▴ 640
I am asking the question because we have two sets of ChIP-seq data for a histone mark (lets' say H3K4me1) that were generated with : <> an…
Comment: performing the differential binding in ChIP-seq by Bogdan ▴ 640
Thank you. Yes, DiffBind might be a good choice shall we have replicates per sample. Another choice is MA-norm2. Any other well-tested sug…
Comment: Error using read.ilmn and neqc by Gordon Smyth 45k
I edited the title of your question to be more specific.
Answer: Using limma to read Illumina HT-12 v4 data by Gordon Smyth 45k
It seems clear that you haven't exported the correct intensity data from GenomeStudio, and I think you recognize that yourself in your ques…
Votes
Answer: how to make a group to apply the data to CAMERA
Answer: how to make a group to apply the data to CAMERA
Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
Awards • All
Scholar to Gordon Smyth 45k
Popular Question to andrebolerbarros ▴ 10
Scholar to James W. MacDonald 59k
Scholar to Guido Hooiveld ★ 3.2k
Scholar to Kevin Blighe 3.5k
Locations • All
United Kingdom, just now
WEHI, Melbourne, Australia, just now
Japan, 22 minutes ago
Palo Alto, CA, USA, 1 hour ago
United States, 2 hours ago
Traffic: 396 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6