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[ReportingTools] HTMLReport of DESeq2 results using Ensembl Gene Ids
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updated 6.7 years ago by ▴ 340 • written 7.8 years ago by ▴ 160
5
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Metagenomic analysis: Aligning ChIPseq data on TSS
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3
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convert data in to expression set
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updated 8.2 years ago by ▴ 180 • written 8.2 years ago by ▴ 80
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convert GeneSetCollection to a list
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updated 9.8 years ago by ★ 2.7k • written 9.8 years ago by ▴ 360
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Converting single GRanges object as per chromosome GRangeList
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updated 7.8 years ago by 13k • written 7.8 years ago by ▴ 260
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handling 12 bit tiffs in EBImage
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updated 11.3 years ago by ▴ 310 • written 11.3 years ago by ▴ 120
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getLDS error in scan
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updated 11 months ago by ★ 5.1k • written 11 months ago by • 0
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Apply non-Gaussian distribution data to limma
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updated 7.8 years ago by 58k • written 7.8 years ago by ★ 12k
1
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800
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converting amino-acid one letter code into cDNA sequene
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5.3 years ago arvind90.psc • 0
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RNA-seq analysis using R
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updated 2.8 years ago by 43k • written 2.8 years ago by • 0
1
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minfi, bumphunter + complex experimental design, and 3 other 450K queries
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updated 5.7 years ago by ▴ 20 • written 7.3 years ago by ★ 3.0k
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Error of GDS2eSet() function
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updated 5.7 years ago by 58k • written 5.7 years ago by • 0
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3
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Converting to official gene symbols
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updated 13.2 years ago by ▴ 20 • written 13.2 years ago by ▴ 90
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GenBank RefSeq conversion
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updated 13.3 years ago by 21k • written 13.3 years ago by ▴ 150
1
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835
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Rsubread for paired end SOLID sequencing
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updated 8.0 years ago by ★ 3.3k • written 8.0 years ago by ▴ 50
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MethyLumiSet object
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8.4 years ago Tim Triche ★ 4.2k
1
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RleList
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updated 7.7 years ago by 11k • written 7.7 years ago by ▴ 20
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Mapping gene symbols to gene names (org.Hs.eg.db?)
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updated 7.4 years ago by 58k • written 7.4 years ago by ★ 1.1k
1
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Can XCMS output continuum/profile data to netCDF format?
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updated 4.8 years ago by ★ 1.9k • written 4.8 years ago by • 0
1
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1
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How to convert Illumina HT_12_v4 annotation
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updated 3.8 years ago by ▴ 160 • written 3.8 years ago by • 0
1
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2
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making ExpressionSet from RGList via NChannelSet for use with 'sva'
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updated 5.5 years ago by 43k • written 5.5 years ago by • 0
1
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3
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805
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To convert MAList to ExpressionSet using R package 'convert'
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updated 4.8 years ago by 43k • written 4.9 years ago by • 0
0
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0
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517
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GenMAPP swissprot question / answers
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18.0 years ago Phguardiol@aol.com ▴ 720
0
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1
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voom() vs. RPKM/FPKM or otherwise normalized counts, and GC correction, when fitting models to a small number of responses (per-feature counts)
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updated 9.3 years ago by 43k • written 9.3 years ago by 6.5k
0
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How to convert Illumina ProbeIDs to nuIDs without nuID indexed annotation libraries?
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updated 13.0 years ago by ★ 1.2k • written 13.0 years ago by ▴ 150
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2
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how to convert expression set data into matrix data ?
convert convert
updated 18.1 years ago by ▴ 920 • written 18.1 years ago by ▴ 10
0
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0
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513
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Re: how to convert expression set data into matrix data ?
convert convert
18.1 years ago Sylvia Merk ▴ 50
0
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0
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Re: Bioconductor Digest, Vol 6, Issue
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18.1 years ago Leslie Cope ▴ 50
0
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2
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500
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multtest question
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updated 18.4 years ago by 2.3k • written 18.4 years ago by ▴ 720
0
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0
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Re: time serie data
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18.0 years ago Nicholas Lewin-Koh ▴ 430
0
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0
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Genomicfeatures chromosome names matching
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9.6 years ago Hervé Pagès 15k
0
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0
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Questions on getting information from affy's CEL, CDF
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18.5 years ago Wolfgang Huber 13k
0
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2
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Importing data into Bioconductor
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18.7 years ago Fernando Henrique Ferraz P da Rosa ▴ 20
0
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2
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question subsetting expressionSet
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updated 9.7 years ago by ▴ 550 • written 9.7 years ago by ★ 3.0k
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arrayQualityMetrics - how do I use this with an MAList object???
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updated 13.0 years ago by ▴ 680 • written 13.0 years ago by 25k
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summarizing probe intensites before or after normalization- 1. how to do with RMA 2. Opinions?
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15.0 years ago James W. MacDonald 58k
0
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Affy : checkSlotAssignment() Error
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18.9 years ago Sundaram, Shyam NIH/CIT ▴ 110
0
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Pathview question
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7.4 years ago Luo Weijun ★ 1.5k
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fastq files
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updated 10.5 years ago by 25k • written 10.5 years ago by ▴ 860
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installing affy devel package
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17.6 years ago Ben Bolstad ★ 1.1k
0
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17.6 years ago Isaac Mehl ▴ 60
0
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6
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DMR identification: minfi speed, memory problems
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updated 7.6 years ago by 58k • written 7.6 years ago by ★ 12k
0
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1
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540
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reading in a text file
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updated 17.5 years ago by ▴ 60 • written 17.5 years ago by ▴ 30
0
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1
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RE: venn diagram
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updated 17.4 years ago by ▴ 620 • written 17.4 years ago by ▴ 20
0
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Re: affylmGUI
Genetics affylmGUI limmaGUI convert Genetics affylmGUI limmaGUI convert
17.3 years ago James Wettenhall ▴ 1000
0
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3
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qvalues, sam, limma
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17.3 years ago Naomi Altman ★ 6.0k
0
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Agilent microarray
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17.2 years ago s-uchida ▴ 20
0
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Re: [R] How to convert a vector into a list
convert convert
17.1 years ago Adaikalavan Ramasamy ★ 1.8k
0
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0
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Annotate Package: How do I get the gene names and how do I write my matrix
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17.1 years ago James W. MacDonald 58k
0
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0
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Question about excluding Affymetrix spike controls from normalization
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17.6 years ago Tan, MinHan ▴ 180
50 results • Page 1 of 1
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Answer: Warning messages on Apple M1 BigSur by Vincent J. Carey, Jr. 6.5k
We are not producing M1 binaries at this time. If you use the intel version of R under Rosetta 2 you can use the intel mac binaries.
Comment: Issue::DesignPrimers DECIPHER by slwmartin • 0
Hey, I'm having this issue too. I've tried reinstalling using Conda a few times without luck. Did you reinstall with Conda or from the tar …
Comment: Log fold change interpretation of time series with Wald test by jd348 • 0
So would you recommend still using Log2fold change as a measurement for effect size?
Answer: Error in `*tmp*`$samples : $ operator is invalid for atomic vectors by James W. MacDonald 58k
I believe you want ``` > x <- as.matrix(read.delim("E:/bioinformatic/RNAseq/GSE168008_raw_count.txt", sep ="" ,row.names = 1)) > sampl…
Comment: Macbook M1 install genefilter failed by Michael Love 34k
What happens when you do ``` library(DESeq2) ``` If it says something about genefilter, then just try to install genefilter, not DESeq2 a…
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Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
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