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Which samples to remove from analysis based on Cook's distance outliers plot
DESeq2
cooks
outliers
updated 14 days ago by
ATpoint
★ 2.4k • written 16 days ago by
Michael
• 0
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Comment: Specific versions of packages
by
Mike Smith
★ 6.0k
Hi Gábor, Great question and suggestion. I wonder if you might get more traction by posting this on either the devel mailing list (https:…
Comment: Batch correction and Deseq2
by
ATpoint
★ 2.4k
Use the default normalization in DESeq2, nothing special here.
Comment: Time-course, comparison of two groups
by
boczniak767
▴ 720
Thank you, so could you please name the method which I should use? In the end I can just compare the expresssion by point-by-point two-way …
Comment: Compare and filter three BAM files
by
wt215
• 0
Thank you, actually, there are two species. The 3rd genome is the combination of them (1st: h. 2nd: m and 3rd: hm). I want to make sure tha…
Comment: DispEsts plot
by
Sep
• 0
I think it is across. My design matrix is like the following: ![enter image description here][1] [1]: /media/images/aec83c83-23ce-4e9f…
Votes
Answer: Can I run DESeq2 with SMART-Seq data
Comment: RUVSeq and DESeq2 -- all variables in design formula must be columns in colData
A: Compare and filter two BAM files, one record at a time
Answer: Batch correction and Deseq2
Answer: How edgeR estimate the common dispersion?
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