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deseq2 outliers cooks cooks distance

updated 2.8 years ago by Michael Love 40k • written 2.8 years ago by donnenfieldjonah • 0

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DESeq2 cooks outliers

updated 12 weeks ago by ATpoint ★ 2.9k • written 3 months ago by Michael • 0

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Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k

See above, you want the sites where `Fold > 0`.

Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k

That does seem like you have a very high number of open chromatin sites changing. How many are in the consensus matrix? You can see how ma…

Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k

I can see the confusion here as one color is being used in two different ways. The dark blue/purple color is used for the bars on the left…

Comment: P-value histogram of testLinearModel is not uniform by ATpoint ★ 2.9k

The work from @csoneson (https://pubmed.ncbi.nlm.nih.gov/29481549/) points out that for scRNA-seq a good prefiltering improves DE reliabili…

Answer: Diffbind "No genome detected" by Rory Stark ★ 4.9k

In this case, `DiffBind` is unable to automatically determine the genome from the supplied Input bam file. You should be able to specify `g…

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Answer: Interpret plot from DiffBind

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