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copynumber
•
reset
5
votes
9
replies
4.2k
views
Looking for annotation file for Affymetrix SNP 6.0
copynumber
snp
affymetrix
8.4 years ago
KB
▴ 50
0
votes
6
replies
2.5k
views
crlmm : copy number and genotyping of Illumina data
SNP
Annotation
Normalization
crlmm
copynumber
SNP
Annotation
Normalization
crlmm
updated 9.9 years ago by
Matthew Ritchie
▴ 1000 • written 9.9 years ago by
Abhishek Pratap
▴ 160
0
votes
1
reply
2.1k
views
crlmm : copy number and genotyping of Illumina data
SNP
Annotation
Normalization
crlmm
copynumber
SNP
Annotation
Normalization
crlmm
updated 10.2 years ago by
Matthew Ritchie
▴ 1000 • written 10.2 years ago by
Abhishek Pratap
▴ 160
1
vote
6
replies
2.1k
views
Copy number analysis from Illumina 550K chip
illumina
copynumber
crlmm
8.5 years ago
stuti.agrawal
• 0
0
votes
5
replies
1.9k
views
Help needed with CopyNumber analysis for Affymetrix 250K arrays
Normalization
probe
copynumber
Normalization
probe
copynumber
updated 16.2 years ago by
Henrik Bengtsson
★ 2.4k • written 16.2 years ago by
Christian.Stratowa@vie.boehringer-ingel…
▴ 270
0
votes
7
replies
1.7k
views
DNA-Methylation, CopyNumber Results
Normalization
Cancer
limma
copynumber
Normalization
Cancer
limma
copynumber
13.6 years ago
Ina Hoeschele
▴ 620
1
vote
3
replies
1.7k
views
copy number variation analysis (CNV)
copynumber
plot
visualization
NGS
gene
updated 3.4 years ago by
Ram
▴ 190 • written 3.5 years ago by
sijing.gsj
• 0
0
votes
3
replies
1.6k
views
Mapping regions to gene symbols
annotation
R
copynumber
updated 6.8 years ago by
Vincent J. Carey, Jr.
6.7k • written 6.8 years ago by
mms140130
• 0
5
votes
3
replies
1.6k
views
Classes and methods for working with segmented copy number data
cgh
copynumber
updated 7.1 years ago by
Marcel Ramos
690 • written 7.7 years ago by
Sean Davis
21k
0
votes
1
reply
1.5k
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 7.7 years ago by
t.kuilman
▴ 170 • written 7.7 years ago by
ahinsahr11
• 0
2
votes
1
reply
1.5k
views
DNAcopy
DNAcopy
copynumber
DNAcopy
copynumber
updated 12.9 years ago by
Sean Davis
21k • written 12.9 years ago by
Yan Jiao
▴ 140
0
votes
2
replies
1.5k
views
Asymmetric colors for heatmap
copynumber
copynumber
18.8 years ago
Christian.Stratowa@vie.boehringer-ingel…
▴ 270
0
votes
4
replies
1.5k
views
Creating a new instance of oligoSnpSet
Annotation
Cancer
Breast
VanillaICE
copynumber
Annotation
Cancer
Breast
VanillaICE
15.4 years ago
Steven McKinney
▴ 310
0
votes
1
reply
1.4k
views
NAs with rawCopynumber() and discrepancies with estimated computed in parallel
crlmm
copynumber
9.1 years ago
kforner
• 0
1
vote
1
reply
1.3k
views
Error genotyping with CRLMM
crlmm
copynumber
illumina
updated 8.5 years ago by
andrew.j.skelton73
▴ 370 • written 8.5 years ago by
stuti.agrawal
• 0
0
votes
2
replies
1.2k
views
CGHcall error
aCGH
Normalization
Cancer
aCGH
CGHcall
copynumber
aCGH
Normalization
Cancer
aCGH
CGHcall
updated 15.6 years ago by
Daniel Rico
▴ 110 • written 15.6 years ago by
James Morris
▴ 40
0
votes
0
replies
1.2k
views
Simple beadarraySNP analysis
SNP
Normalization
Cancer
Colon
PROcess
beadarraySNP
copynumber
SNP
Normalization
Cancer
14.9 years ago
Dmitri Mouradov
▴ 20
0
votes
1
reply
1.2k
views
Supporting grch38 and making the species agnostic pcf function in copynumber package
copynumber
7.1 years ago • updated 6.9 years ago
shrirambhosle
• 0
0
votes
0
replies
985
views
calling aberrations after segmentation with \"copynumber\" package
aCGH
aCGH
copynumber
aCGH
aCGH
copynumber
10.2 years ago
Guest User
★ 13k
0
votes
1
reply
890
views
CopywriteR - low coverage-regions display very low numbers
copywriter
copynumber
updated 5.6 years ago by
t.kuilman
▴ 170 • written 5.6 years ago by
magdaaverte
• 0
0
votes
0
replies
790
views
Bug with interpolate.pcf.r from copynumber
copynumber
6.5 years ago
aspergillus.cec
• 0
0
votes
0
replies
772
views
Is there a package that help me draw copy number alteration for each chromosome?
copynumber
alteration
5.5 years ago
Arman Shahrisa
▴ 20
0
votes
1
reply
591
views
copynumber package issue
copynumber
updated 3.5 years ago by
James W. MacDonald
65k • written 3.5 years ago by
sylvain.brohee
• 0
23 results • Page
1 of 1
Recent ...
Replies
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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