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copynumber
•
reset
5
votes
9
replies
4.7k
views
Looking for annotation file for Affymetrix SNP 6.0
copynumber
snp
affymetrix
9.3 years ago
KB
▴ 50
1
vote
6
replies
2.5k
views
Copy number analysis from Illumina 550K chip
illumina
copynumber
crlmm
9.4 years ago
stuti.agrawal
• 0
0
votes
2
replies
1.4k
views
CGHcall error
aCGH
Normalization
Cancer
aCGH
CGHcall
copynumber
aCGH
Normalization
Cancer
aCGH
CGHcall
updated 16.5 years ago by
Daniel Rico
▴ 110 • written 16.5 years ago by
James Morris
▴ 40
0
votes
2
replies
1.8k
views
Asymmetric colors for heatmap
copynumber
copynumber
19.7 years ago
Christian.Stratowa@vie.boehringer-ingel…
▴ 270
0
votes
5
replies
2.3k
views
Help needed with CopyNumber analysis for Affymetrix 250K arrays
Normalization
probe
copynumber
Normalization
probe
copynumber
updated 17.2 years ago by
Henrik Bengtsson
★ 2.4k • written 17.2 years ago by
Christian.Stratowa@vie.boehringer-ingel…
▴ 270
5
votes
3
replies
1.9k
views
Classes and methods for working with segmented copy number data
cgh
copynumber
updated 8.0 years ago by
Marcel Ramos
700 • written 8.6 years ago by
Sean Davis
21k
0
votes
7
replies
2.1k
views
DNA-Methylation, CopyNumber Results
Normalization
Cancer
limma
copynumber
Normalization
Cancer
limma
copynumber
14.6 years ago
Ina Hoeschele
▴ 620
0
votes
3
replies
2.1k
views
Mapping regions to gene symbols
annotation
R
copynumber
updated 7.7 years ago by
Vincent J. Carey, Jr.
6.7k • written 7.7 years ago by
mms140130
• 0
0
votes
1
reply
1.1k
views
CopywriteR - low coverage-regions display very low numbers
copywriter
copynumber
updated 6.5 years ago by
t.kuilman
▴ 170 • written 6.5 years ago by
magdaaverte
• 0
1
vote
3
replies
2.4k
views
copy number variation analysis (CNV)
copynumber
plot
visualization
NGS
gene
updated 4.3 years ago by
Ram
▴ 220 • written 4.4 years ago by
sijing.gsj
• 0
2
votes
1
reply
1.8k
views
DNAcopy
DNAcopy
copynumber
DNAcopy
copynumber
updated 13.8 years ago by
Sean Davis
21k • written 13.8 years ago by
Yan Jiao
▴ 140
0
votes
1
reply
2.4k
views
crlmm : copy number and genotyping of Illumina data
SNP
Annotation
Normalization
crlmm
copynumber
SNP
Annotation
Normalization
crlmm
updated 11.1 years ago by
Matthew Ritchie
▴ 1000 • written 11.1 years ago by
Abhishek Pratap
▴ 160
0
votes
6
replies
2.9k
views
crlmm : copy number and genotyping of Illumina data
SNP
Annotation
Normalization
crlmm
copynumber
SNP
Annotation
Normalization
crlmm
updated 10.8 years ago by
Matthew Ritchie
▴ 1000 • written 10.8 years ago by
Abhishek Pratap
▴ 160
0
votes
1
reply
1.6k
views
NAs with rawCopynumber() and discrepancies with estimated computed in parallel
crlmm
copynumber
10.1 years ago
kforner
• 0
1
vote
1
reply
1.6k
views
Error genotyping with CRLMM
crlmm
copynumber
illumina
updated 9.4 years ago by
andrew.j.skelton73
▴ 370 • written 9.4 years ago by
stuti.agrawal
• 0
0
votes
4
replies
1.7k
views
Creating a new instance of oligoSnpSet
Annotation
Cancer
Breast
VanillaICE
copynumber
Annotation
Cancer
Breast
VanillaICE
16.3 years ago
Steven McKinney
▴ 310
0
votes
1
reply
1.9k
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 8.7 years ago by
t.kuilman
▴ 170 • written 8.7 years ago by
ahinsahr11
• 0
0
votes
1
reply
767
views
copynumber package issue
copynumber
updated 4.4 years ago by
James W. MacDonald
68k • written 4.4 years ago by
sylvain.brohee
• 0
0
votes
1
reply
1.4k
views
Supporting grch38 and making the species agnostic pcf function in copynumber package
copynumber
8.0 years ago • updated 7.8 years ago
shrirambhosle
• 0
0
votes
0
replies
1.2k
views
calling aberrations after segmentation with \"copynumber\" package
aCGH
aCGH
copynumber
aCGH
aCGH
copynumber
11.2 years ago
Guest User
★ 13k
0
votes
0
replies
1.4k
views
Simple beadarraySNP analysis
SNP
Normalization
Cancer
Colon
PROcess
beadarraySNP
copynumber
SNP
Normalization
Cancer
15.9 years ago
Dmitri Mouradov
▴ 20
0
votes
0
replies
1.0k
views
Bug with interpolate.pcf.r from copynumber
copynumber
7.4 years ago
aspergillus.cec
• 0
0
votes
0
replies
915
views
Is there a package that help me draw copy number alteration for each chromosome?
copynumber
alteration
6.5 years ago
Arman Shahrisa
▴ 20
23 results • Page
1 of 1
Recent ...
Replies
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files
by
Mike Smith
★ 6.6k
Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…
Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows
by
James W. MacDonald
68k
The annotation data that is provided for this array is simply a repackaging of data that we get from Illumina, so any apparent inconsistenc…
Answer: Package developing and interoperation with Bioconductor
by
James W. MacDonald
68k
Ideally you would have S4 methods that dispatch on the incoming data structure, so people could call your main function using a `data.frame…
Comment: ComBat with repeated measures
by
ATpoint
★ 4.8k
It looks to me that you do not need the batch information since subject is nested with batch so correcting for subject will do a paired ana…
Comment: Surprising behavior for DEXseq dispersion estimate plot?
by
ATpoint
★ 4.8k
You realize this is a spam bot talking to you?
Votes
Answer: Package developing and interoperation with Bioconductor
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
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