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Showing :
copynumber
•
reset
5
votes
9
replies
4.7k
views
Looking for annotation file for Affymetrix SNP 6.0
copynumber
snp
affymetrix
9.3 years ago
KB
▴ 50
0
votes
6
replies
2.9k
views
crlmm : copy number and genotyping of Illumina data
SNP
Annotation
Normalization
crlmm
copynumber
SNP
Annotation
Normalization
crlmm
updated 10.8 years ago by
Matthew Ritchie
▴ 1000 • written 10.8 years ago by
Abhishek Pratap
▴ 160
1
vote
6
replies
2.5k
views
Copy number analysis from Illumina 550K chip
illumina
copynumber
crlmm
9.4 years ago
stuti.agrawal
• 0
1
vote
3
replies
2.4k
views
copy number variation analysis (CNV)
copynumber
plot
visualization
NGS
gene
updated 4.3 years ago by
Ram
▴ 220 • written 4.4 years ago by
sijing.gsj
• 0
0
votes
1
reply
2.4k
views
crlmm : copy number and genotyping of Illumina data
SNP
Annotation
Normalization
crlmm
copynumber
SNP
Annotation
Normalization
crlmm
updated 11.1 years ago by
Matthew Ritchie
▴ 1000 • written 11.1 years ago by
Abhishek Pratap
▴ 160
0
votes
5
replies
2.3k
views
Help needed with CopyNumber analysis for Affymetrix 250K arrays
Normalization
probe
copynumber
Normalization
probe
copynumber
updated 17.2 years ago by
Henrik Bengtsson
★ 2.4k • written 17.2 years ago by
Christian.Stratowa@vie.boehringer-ingel…
▴ 270
0
votes
3
replies
2.1k
views
Mapping regions to gene symbols
annotation
R
copynumber
updated 7.7 years ago by
Vincent J. Carey, Jr.
6.7k • written 7.7 years ago by
mms140130
• 0
0
votes
7
replies
2.1k
views
DNA-Methylation, CopyNumber Results
Normalization
Cancer
limma
copynumber
Normalization
Cancer
limma
copynumber
14.6 years ago
Ina Hoeschele
▴ 620
0
votes
1
reply
1.9k
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 8.7 years ago by
t.kuilman
▴ 170 • written 8.7 years ago by
ahinsahr11
• 0
5
votes
3
replies
1.9k
views
Classes and methods for working with segmented copy number data
cgh
copynumber
updated 8.0 years ago by
Marcel Ramos
700 • written 8.6 years ago by
Sean Davis
21k
2
votes
1
reply
1.8k
views
DNAcopy
DNAcopy
copynumber
DNAcopy
copynumber
updated 13.8 years ago by
Sean Davis
21k • written 13.8 years ago by
Yan Jiao
▴ 140
0
votes
2
replies
1.8k
views
Asymmetric colors for heatmap
copynumber
copynumber
19.7 years ago
Christian.Stratowa@vie.boehringer-ingel…
▴ 270
0
votes
4
replies
1.7k
views
Creating a new instance of oligoSnpSet
Annotation
Cancer
Breast
VanillaICE
copynumber
Annotation
Cancer
Breast
VanillaICE
16.3 years ago
Steven McKinney
▴ 310
0
votes
1
reply
1.6k
views
NAs with rawCopynumber() and discrepancies with estimated computed in parallel
crlmm
copynumber
10.1 years ago
kforner
• 0
1
vote
1
reply
1.6k
views
Error genotyping with CRLMM
crlmm
copynumber
illumina
updated 9.4 years ago by
andrew.j.skelton73
▴ 370 • written 9.4 years ago by
stuti.agrawal
• 0
0
votes
2
replies
1.4k
views
CGHcall error
aCGH
Normalization
Cancer
aCGH
CGHcall
copynumber
aCGH
Normalization
Cancer
aCGH
CGHcall
updated 16.5 years ago by
Daniel Rico
▴ 110 • written 16.5 years ago by
James Morris
▴ 40
0
votes
1
reply
1.4k
views
Supporting grch38 and making the species agnostic pcf function in copynumber package
copynumber
8.0 years ago • updated 7.8 years ago
shrirambhosle
• 0
0
votes
0
replies
1.4k
views
Simple beadarraySNP analysis
SNP
Normalization
Cancer
Colon
PROcess
beadarraySNP
copynumber
SNP
Normalization
Cancer
15.8 years ago
Dmitri Mouradov
▴ 20
0
votes
0
replies
1.2k
views
calling aberrations after segmentation with \"copynumber\" package
aCGH
aCGH
copynumber
aCGH
aCGH
copynumber
11.2 years ago
Guest User
★ 13k
0
votes
1
reply
1.1k
views
CopywriteR - low coverage-regions display very low numbers
copywriter
copynumber
updated 6.5 years ago by
t.kuilman
▴ 170 • written 6.5 years ago by
magdaaverte
• 0
0
votes
0
replies
1.0k
views
Bug with interpolate.pcf.r from copynumber
copynumber
7.4 years ago
aspergillus.cec
• 0
0
votes
0
replies
914
views
Is there a package that help me draw copy number alteration for each chromosome?
copynumber
alteration
6.5 years ago
Arman Shahrisa
▴ 20
0
votes
1
reply
767
views
copynumber package issue
copynumber
updated 4.4 years ago by
James W. MacDonald
68k • written 4.4 years ago by
sylvain.brohee
• 0
23 results • Page
1 of 1
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Comment: Package developing and interoperation with Bioconductor
by
shepherl
4.1k
Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files
by
Sofia
• 0
1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …
Comment: Validity of SingleR with very small bulk RNAseq reference
by
Rohit
• 0
Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge
Comment: CpGs with genomic positions greater than the chromosome size in EPICv2?
by
Joshua Llano
• 0
Thank you for your reply James. I was worried that it was my mistake.
Comment: Annotation package for Manduca sexta
by
GA
▴ 10
Thank you!
Votes
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
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