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Showing :
copynumber
•
reset
5
votes
9
replies
5.0k
views
Looking for annotation file for Affymetrix SNP 6.0
copynumber
snp
affymetrix
10.1 years ago • updated 10.0 years ago
KB
▴ 50
0
votes
6
replies
3.2k
views
crlmm : copy number and genotyping of Illumina data
SNP
Annotation
Normalization
crlmm
copynumber
SNP
Annotation
Normalization
crlmm
updated 11.5 years ago by
Matthew Ritchie
▴ 1000 • written 11.5 years ago by
Abhishek Pratap
▴ 160
1
vote
6
replies
2.8k
views
Copy number analysis from Illumina 550K chip
illumina
copynumber
crlmm
10.2 years ago
stuti.agrawal
• 0
1
vote
3
replies
2.7k
views
copy number variation analysis (CNV)
copynumber
plot
visualization
NGS
gene
updated 5.0 years ago by
Ram
▴ 220 • written 5.2 years ago by
sijing.gsj
• 0
0
votes
1
reply
2.6k
views
crlmm : copy number and genotyping of Illumina data
SNP
Annotation
Normalization
crlmm
copynumber
SNP
Annotation
Normalization
crlmm
updated 11.8 years ago by
Matthew Ritchie
▴ 1000 • written 11.8 years ago by
Abhishek Pratap
▴ 160
0
votes
5
replies
2.5k
views
Help needed with CopyNumber analysis for Affymetrix 250K arrays
Normalization
probe
copynumber
Normalization
probe
copynumber
updated 17.9 years ago by
Henrik Bengtsson
★ 2.4k • written 17.9 years ago by
Christian.Stratowa@vie.boehringer-ingel…
▴ 270
0
votes
3
replies
2.4k
views
Mapping regions to gene symbols
annotation
R
copynumber
updated 8.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 8.5 years ago by
mms140130
• 0
0
votes
7
replies
2.4k
views
DNA-Methylation, CopyNumber Results
Normalization
Cancer
limma
copynumber
Normalization
Cancer
limma
copynumber
15.3 years ago
Ina Hoeschele
▴ 620
0
votes
1
reply
2.2k
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 9.4 years ago by
t.kuilman
▴ 170 • written 9.4 years ago by
ahinsahr11
• 0
5
votes
3
replies
2.1k
views
Classes and methods for working with segmented copy number data
cgh
copynumber
updated 8.7 years ago by
Marcel Ramos
700 • written 9.3 years ago by
Sean Davis
21k
2
votes
1
reply
2.0k
views
DNAcopy
DNAcopy
copynumber
DNAcopy
copynumber
updated 14.5 years ago by
Sean Davis
21k • written 14.5 years ago by
Yan Jiao
▴ 140
0
votes
2
replies
2.0k
views
Asymmetric colors for heatmap
copynumber
copynumber
20.4 years ago
Christian.Stratowa@vie.boehringer-ingel…
▴ 270
0
votes
4
replies
2.0k
views
Creating a new instance of oligoSnpSet
Annotation
Cancer
Breast
VanillaICE
copynumber
Annotation
Cancer
Breast
VanillaICE
17.1 years ago
Steven McKinney
▴ 310
1
vote
1
reply
1.8k
views
Error genotyping with CRLMM
crlmm
copynumber
illumina
updated 10.2 years ago by
andrew.j.skelton73
▴ 370 • written 10.2 years ago by
stuti.agrawal
• 0
0
votes
1
reply
1.8k
views
NAs with rawCopynumber() and discrepancies with estimated computed in parallel
crlmm
copynumber
10.8 years ago
kforner
• 0
0
votes
1
reply
1.6k
views
Supporting grch38 and making the species agnostic pcf function in copynumber package
copynumber
8.7 years ago • updated 8.5 years ago
shrirambhosle
• 0
0
votes
2
replies
1.5k
views
CGHcall error
aCGH
Normalization
Cancer
aCGH
CGHcall
copynumber
aCGH
Normalization
Cancer
aCGH
CGHcall
updated 17.2 years ago by
Daniel Rico
▴ 110 • written 17.2 years ago by
James Morris
▴ 40
0
votes
0
replies
1.5k
views
Simple beadarraySNP analysis
SNP
Normalization
Cancer
Colon
PROcess
beadarraySNP
copynumber
SNP
Normalization
Cancer
16.6 years ago
Dmitri Mouradov
▴ 20
0
votes
1
reply
1.4k
views
CopywriteR - low coverage-regions display very low numbers
copywriter
copynumber
updated 7.2 years ago by
t.kuilman
▴ 170 • written 7.2 years ago by
magdaaverte
• 0
0
votes
0
replies
1.3k
views
calling aberrations after segmentation with \"copynumber\" package
aCGH
aCGH
copynumber
aCGH
aCGH
copynumber
11.9 years ago
Guest User
★ 13k
0
votes
0
replies
1.1k
views
Bug with interpolate.pcf.r from copynumber
copynumber
8.1 years ago
aspergillus.cec
• 0
0
votes
0
replies
1.0k
views
Is there a package that help me draw copy number alteration for each chromosome?
copynumber
alteration
7.2 years ago
Arman Shahrisa
▴ 20
0
votes
1
reply
898
views
copynumber package issue
copynumber
updated 5.2 years ago by
James W. MacDonald
68k • written 5.2 years ago by
sylvain.brohee
• 0
23 results • Page
1 of 1
Recent ...
Replies
Comment: Bioinformatician at the Lausanne University Hospital
by
eja.ger.m
• 0
For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …
Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards
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Popular Question
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Lluís Revilla Sancho
▴ 760
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to
James W. MacDonald
68k
Popular Question
to
shepherl
4.2k
Popular Question
to
Gordon Smyth
53k
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to
sina.nassiri
▴ 130
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