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Showing :
copynumber
•
reset
5
votes
9
replies
3.2k
views
Looking for annotation file for Affymetrix SNP 6.0
copynumber
snp
affymetrix
6.6 years ago
K
▴ 50
0
votes
6
replies
1.8k
views
crlmm : copy number and genotyping of Illumina data
SNP
Annotation
Normalization
crlmm
copynumber
SNP
Annotation
Normalization
crlmm
updated 8.1 years ago by
Matthew Ritchie
▴ 1000 • written 8.1 years ago by
Abhishek Pratap
▴ 160
0
votes
1
reply
1.7k
views
crlmm : copy number and genotyping of Illumina data
SNP
Annotation
Normalization
crlmm
copynumber
SNP
Annotation
Normalization
crlmm
updated 8.4 years ago by
Matthew Ritchie
▴ 1000 • written 8.4 years ago by
Abhishek Pratap
▴ 160
1
vote
6
replies
1.4k
views
Copy number analysis from Illumina 550K chip
illumina
copynumber
crlmm
6.7 years ago
stuti.agrawal
• 0
0
votes
5
replies
1.3k
views
Help needed with CopyNumber analysis for Affymetrix 250K arrays
Normalization
probe
copynumber
Normalization
probe
copynumber
updated 14.4 years ago by
Henrik Bengtsson
★ 2.4k • written 14.4 years ago by
Christian.Stratowa@vie.boehringer-ingel…
▴ 270
0
votes
7
replies
1.0k
views
DNA-Methylation, CopyNumber Results
Normalization
Cancer
limma
copynumber
Normalization
Cancer
limma
copynumber
11.8 years ago
Ina Hoeschele
▴ 620
0
votes
2
replies
1.0k
views
Asymmetric colors for heatmap
copynumber
copynumber
16.9 years ago
Christian.Stratowa@vie.boehringer-ingel…
▴ 270
5
votes
3
replies
1.0k
views
Classes and methods for working with segmented copy number data
cgh
copynumber
updated 5.2 years ago by
Marcel Ramos
570 • written 5.9 years ago by
Sean Davis
21k
0
votes
4
replies
1.0k
views
Creating a new instance of oligoSnpSet
Annotation
Cancer
Breast
VanillaICE
copynumber
Annotation
Cancer
Breast
VanillaICE
13.6 years ago
Steven McKinney
▴ 310
0
votes
1
reply
971
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 5.9 years ago by
t.kuilman
170 • written 5.9 years ago by
ahinsahr11
• 0
2
votes
1
reply
966
views
DNAcopy
DNAcopy
copynumber
DNAcopy
copynumber
updated 11.1 years ago by
Sean Davis
21k • written 11.1 years ago by
Yan Jiao
▴ 140
0
votes
1
reply
916
views
NAs with rawCopynumber() and discrepancies with estimated computed in parallel
crlmm
copynumber
7.3 years ago
kforner
• 0
1
vote
1
reply
870
views
Error genotyping with CRLMM
crlmm
copynumber
illumina
updated 6.7 years ago by
andrew.j.skelton73
▴ 360 • written 6.7 years ago by
stuti.agrawal
• 0
0
votes
3
replies
849
views
Mapping regions to gene symbols
annotation
R
copynumber
updated 5.0 years ago by
Vincent J. Carey, Jr.
6.6k • written 5.0 years ago by
mms140130
• 0
0
votes
0
replies
827
views
Simple beadarraySNP analysis
SNP
Normalization
Cancer
Colon
PROcess
beadarraySNP
copynumber
SNP
Normalization
Cancer
13.1 years ago
Dmitri Mouradov
▴ 20
0
votes
2
replies
719
views
CGHcall error
aCGH
Normalization
Cancer
aCGH
CGHcall
copynumber
aCGH
Normalization
Cancer
aCGH
CGHcall
updated 13.7 years ago by
Daniel Rico
▴ 110 • written 13.7 years ago by
James Morris
▴ 40
0
votes
0
replies
708
views
calling aberrations after segmentation with \"copynumber\" package
aCGH
aCGH
copynumber
aCGH
aCGH
copynumber
8.4 years ago
Guest User
★ 12k
0
votes
1
reply
684
views
Supporting grch38 and making the species agnostic pcf function in copynumber package
copynumber
5.2 years ago • updated 5.1 years ago
shrirambhosle
• 0
1
vote
3
replies
609
views
copy number variation analysis (CNV)
copynumber
plot
visualization
NGS
gene
updated 18 months ago by
Ram
▴ 150 • written 20 months ago by
sijing.gsj
• 0
0
votes
1
reply
508
views
CopywriteR - low coverage-regions display very low numbers
copywriter
copynumber
updated 3.8 years ago by
t.kuilman
170 • written 3.8 years ago by
magdaaverte
• 0
0
votes
0
replies
499
views
Is there a package that help me draw copy number alteration for each chromosome?
copynumber
alteration
3.7 years ago
Arman Shahrisa
▴ 20
0
votes
0
replies
430
views
Bug with interpolate.pcf.r from copynumber
copynumber
4.7 years ago
aspergillus.cec
• 0
0
votes
1
reply
218
views
copynumber package issue
copynumber
updated 20 months ago by
James W. MacDonald
60k • written 20 months ago by
sylvain.brohee
• 0
23 results • Page
1 of 1
Recent ...
Replies
Answer: What are the data values in qRT-PCR for statistical testing? dCT? or 2^-dCT?
by
James W. MacDonald
60k
This support site is intended to help people with questions about Bioconductor software, not general statistical questions. You should try …
Comment: Scaling for p.heatmap
by
Bhavana
• 0
Okay, I understand...Thank you for the clarification! And thanks for pointing out that I need to update my versions :)
Comment: How to combine VCF-class and data.frame with annotations
by
didanax972
• 0
If you have more than one VCF file and want to merge all VCF files then you create one VCF file without any data loss by using VCF Merge & …
Comment: VariantAnnotation R Package - Merging Two VCF files
by
didanax972
• 0
In case you like to merge the numerous VCF files into a single file then you should opt for the VCF Merger tool. This tool is a dedicated a…
Comment: merging VCF files
by
didanax972
• 0
Use Merge VCF a quick and instant solution to combine multiple VCF files into a new VCF file. The tool effortlessly merges multiple VCF fil…
Votes
C: DESeq2 lfcShrink() usage of coef vs. usage of contrast
C: DESeq2 lfcShrink() usage of coef vs. usage of contrast
Comment: Using Age or other numerical variable to model expression in deseq2
Comment: Using Age or other numerical variable to model expression in deseq2
Answer: Using Age or other numerical variable to model expression in deseq2
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