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copywriteR
•
reset
0
votes
7
replies
2.3k
views
Multithreading CopywriteR on SLURM cluster
copywriter
slurm
openMPI
updated 9.0 years ago by
t.kuilman
▴ 170 • written 9.0 years ago by
smcnulty
• 0
2
votes
9
replies
2.9k
views
Calling amplifications and deletions from CopywriteR output
CopywriteR
copy number
updated 9.0 years ago by
t.kuilman
▴ 170 • written 9.0 years ago by
smcnulty
• 0
1
vote
2
replies
1.5k
views
Copywriter output looks strange
copywriter
9.0 years ago
MatthewGField
▴ 10
1
vote
2
replies
2.0k
views
BiocParallel and CopywriteR Error
bioconductor
biocparallel
copywriter
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
genomic8328
▴ 10
3
votes
12
replies
2.4k
views
S4Vectors and subectHits error
s4vectors
copywriter
updated 6.8 years ago by
Michael Lawrence
★ 11k • written 6.8 years ago by
TriS
▴ 200
0
votes
3
replies
1.6k
views
CopywriteR error: "Error in .Method"
CopywriteR
8.6 years ago
Tom
▴ 10
0
votes
1
reply
1.9k
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 8.6 years ago by
t.kuilman
▴ 170 • written 8.6 years ago by
ahinsahr11
• 0
0
votes
1
reply
1.3k
views
Problems with CopywriteR
copywriter
updated 7.9 years ago by
t.kuilman
▴ 170 • written 7.9 years ago by
filipzembol
• 0
0
votes
1
reply
1.1k
views
CopywriteR - low coverage-regions display very low numbers
copywriter
copynumber
updated 6.4 years ago by
t.kuilman
▴ 170 • written 6.4 years ago by
magdaaverte
• 0
2
votes
4
replies
1.2k
views
CopywriteR job runs out of memory
copywriter
cnv
updated 4.8 years ago by
oscarkrijgsman
▴ 20 • written 4.8 years ago by
Ram
▴ 220
2
votes
1
reply
1.4k
views
Copyhelper: Preprocession of mappability
CopywriteR
updated 9.1 years ago by
t.kuilman
▴ 170 • written 9.1 years ago by
Felix
• 0
0
votes
1
reply
1.6k
views
CopywriteR - choosing optimal bin size for targeted sequencing panel
copywriter
bin size
targeted sequencing
updated 9.0 years ago by
t.kuilman
▴ 170 • written 9.0 years ago by
sshung
• 0
2
votes
4
replies
2.7k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter
dnacopy
updated 9.0 years ago by
t.kuilman
▴ 170 • written 9.0 years ago by
jcarter
• 0
3
votes
3
replies
4.3k
views
Preparing CopywriteR output for GISTIC 2.0 analysis
copywriter
updated 9.0 years ago by
t.kuilman
▴ 170 • written 9.0 years ago by
jcarter
• 0
1
vote
3
replies
1.6k
views
CopywriteR can't finish calculating copy number
copywriter
bam
updated 8.7 years ago by
t.kuilman
▴ 170 • written 8.7 years ago by
thestaroceanster
• 0
0
votes
1
reply
740
views
CopywriteR output
CopywriteR
updated 10 months ago by
fer_talavera
• 0 • written 3.3 years ago by
Joshua
• 0
0
votes
2
replies
605
views
Error in if (nrow(peaks) > 0) { : argument is of length zero Calls: CopywriteR ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> Execution h…
CopywriteR
CopyhelpeR
10 months ago
fer_talavera
• 0
17 results • Page
1 of 1
Recent ...
Replies
Comment: Overcoming confounding in batch effect correction
by
ATpoint
★ 4.7k
biostars.org and the [bioinformatics reddit][1] are suitable and have much larger audience than this forum here. [1]: https://www.reddi…
Comment: Overcoming confounding in batch effect correction
by
bbao
▴ 10
Thank you! And apologies for posting here. Do you know which forum I should go to in the future for questions like these?
Comment: For some reason I can't update BiocManager to 3.20
by
shepherl
4.1k
interesting. it could be since this is not your installation that it was installed by an admin that you do not have access to perform this…
Comment: Overcoming confounding in batch effect correction
by
ATpoint
★ 4.7k
Hi, this is not related to Bioconductor directly. And no, you cannot correct anything because in your own batch you only have a single samp…
Comment: MEDIPS - error using MEDIPS.CpGenrich
by
sg
• 0
I have the same error when I use 22 chrs with the paramenters chr.select: Error in h(simpleError(msg, call)) : error in evaluating the …
Votes
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
Comment: Overcoming confounding in batch effect correction
Overcoming confounding in batch effect correction
Answer: Standardization of rlog transformed counts before PCA
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4.1k
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ATpoint
★ 4.7k
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