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copywriteR
•
reset
3
votes
3
replies
3.8k
views
Preparing CopywriteR output for GISTIC 2.0 analysis
copywriter
updated 8.1 years ago by
t.kuilman
▴ 170 • written 8.1 years ago by
jcarter
• 0
2
votes
9
replies
2.4k
views
Calling amplifications and deletions from CopywriteR output
CopywriteR
copy number
updated 8.2 years ago by
t.kuilman
▴ 170 • written 8.2 years ago by
smcnulty
• 0
2
votes
4
replies
2.3k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter
dnacopy
updated 8.1 years ago by
t.kuilman
▴ 170 • written 8.1 years ago by
jcarter
• 0
3
votes
12
replies
2.0k
views
S4Vectors and subectHits error
s4vectors
copywriter
updated 6.0 years ago by
Michael Lawrence
★ 11k • written 6.0 years ago by
TriS
▴ 200
0
votes
7
replies
2.0k
views
Multithreading CopywriteR on SLURM cluster
copywriter
slurm
openMPI
updated 8.2 years ago by
t.kuilman
▴ 170 • written 8.2 years ago by
smcnulty
• 0
1
vote
2
replies
1.7k
views
BiocParallel and CopywriteR Error
bioconductor
biocparallel
copywriter
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
genomic8328
▴ 10
0
votes
1
reply
1.5k
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 7.7 years ago by
t.kuilman
▴ 170 • written 7.7 years ago by
ahinsahr11
• 0
0
votes
3
replies
1.4k
views
CopywriteR error: "Error in .Method"
CopywriteR
7.8 years ago
Tom
▴ 10
1
vote
3
replies
1.4k
views
CopywriteR can't finish calculating copy number
copywriter
bam
updated 7.9 years ago by
t.kuilman
▴ 170 • written 7.9 years ago by
thestaroceanster
• 0
0
votes
1
reply
1.3k
views
CopywriteR - choosing optimal bin size for targeted sequencing panel
copywriter
bin size
targeted sequencing
updated 8.2 years ago by
t.kuilman
▴ 170 • written 8.2 years ago by
sshung
• 0
1
vote
2
replies
1.2k
views
Copywriter output looks strange
copywriter
8.2 years ago
MatthewGField
▴ 10
2
votes
1
reply
1.2k
views
Copyhelper: Preprocession of mappability
CopywriteR
updated 8.3 years ago by
t.kuilman
▴ 170 • written 8.3 years ago by
Felix
• 0
0
votes
1
reply
1.1k
views
Problems with CopywriteR
copywriter
updated 7.1 years ago by
t.kuilman
▴ 170 • written 7.1 years ago by
filipzembol
• 0
0
votes
1
reply
886
views
CopywriteR - low coverage-regions display very low numbers
copywriter
copynumber
updated 5.6 years ago by
t.kuilman
▴ 170 • written 5.6 years ago by
magdaaverte
• 0
2
votes
4
replies
869
views
CopywriteR job runs out of memory
copywriter
cnv
updated 4.0 years ago by
oscarkrijgsman
▴ 20 • written 4.0 years ago by
Ram
▴ 190
0
votes
1
reply
528
views
CopywriteR output
CopywriteR
updated 13 days ago by
fer_talavera
• 0 • written 2.5 years ago by
Joshua
• 0
0
votes
2
replies
259
views
Error in if (nrow(peaks) > 0) { : argument is of length zero Calls: CopywriteR ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> Execution h…
CopywriteR
CopyhelpeR
18 days ago • updated 13 days ago
fer_talavera
• 0
17 results • Page
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Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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