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copywriter
•
reset
0
votes
7
replies
2.7k
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Multithreading CopywriteR on SLURM cluster
copywriter
slurm
openMPI
updated 9.9 years ago by
t.kuilman
▴ 170 • written 9.9 years ago by
smcnulty
• 0
2
votes
9
replies
3.5k
views
Calling amplifications and deletions from CopywriteR output
CopywriteR
copy number
updated 9.9 years ago by
t.kuilman
▴ 170 • written 10.0 years ago by
smcnulty
• 0
1
vote
2
replies
1.7k
views
Copywriter output looks strange
copywriter
9.9 years ago
MatthewGField
▴ 10
1
vote
2
replies
2.3k
views
BiocParallel and CopywriteR Error
bioconductor
biocparallel
copywriter
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
genomic8328
▴ 10
3
votes
12
replies
3.0k
views
S4Vectors and subectHits error
s4vectors
copywriter
updated 7.8 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
TriS
▴ 200
0
votes
3
replies
1.9k
views
CopywriteR error: "Error in .Method"
CopywriteR
9.5 years ago
Tom
▴ 10
0
votes
1
reply
2.3k
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 9.5 years ago by
t.kuilman
▴ 170 • written 9.5 years ago by
ahinsahr11
• 0
0
votes
1
reply
1.5k
views
Problems with CopywriteR
copywriter
updated 8.8 years ago by
t.kuilman
▴ 170 • written 8.8 years ago by
filipzembol
• 0
0
votes
1
reply
1.4k
views
CopywriteR - low coverage-regions display very low numbers
copywriter
copynumber
updated 7.3 years ago by
t.kuilman
▴ 170 • written 7.3 years ago by
magdaaverte
• 0
2
votes
4
replies
1.5k
views
CopywriteR job runs out of memory
copywriter
cnv
updated 5.7 years ago by
oscarkrijgsman
▴ 20 • written 5.7 years ago by
Ram
▴ 220
2
votes
1
reply
1.7k
views
Copyhelper: Preprocession of mappability
CopywriteR
updated 10.1 years ago by
t.kuilman
▴ 170 • written 10.1 years ago by
Felix
• 0
0
votes
1
reply
1.9k
views
CopywriteR - choosing optimal bin size for targeted sequencing panel
copywriter
bin size
targeted sequencing
updated 9.9 years ago by
t.kuilman
▴ 170 • written 9.9 years ago by
sshung
• 0
2
votes
4
replies
3.1k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter
dnacopy
updated 9.9 years ago by
t.kuilman
▴ 170 • written 9.9 years ago by
jcarter
• 0
3
votes
3
replies
4.9k
views
Preparing CopywriteR output for GISTIC 2.0 analysis
copywriter
updated 9.9 years ago by
t.kuilman
▴ 170 • written 9.9 years ago by
jcarter
• 0
1
vote
3
replies
1.9k
views
CopywriteR can't finish calculating copy number
copywriter
bam
updated 9.7 years ago by
t.kuilman
▴ 170 • written 9.7 years ago by
thestaroceanster
• 0
0
votes
1
reply
1.0k
views
CopywriteR output
CopywriteR
updated 21 months ago by
fer_talavera
• 0 • written 4.2 years ago by
Joshua
• 0
0
votes
2
replies
873
views
Error in if (nrow(peaks) > 0) { : argument is of length zero Calls: CopywriteR ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> Execution h…
CopywriteR
CopyhelpeR
22 months ago • updated 21 months ago
fer_talavera
• 0
17 results • Page
1 of 1
Recent ...
Replies
Comment: How to convert .raw data for use in xcms
by
TikTsossa33ssalpc
• 0
It sounds like your mzML conversion has a CV term that XCMS doesn t recognize, which often happens with newer vendor formats or outdated ms…
Comment: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace
by
TikTsossa33ssalpc
• 0
To calculate event numbers for boolean combinations in flow cytometry, you should use a logic gating tool or a script that processes popula…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
chp265
• 0
Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…
Comment: Combining two proteomics datasets with limpa
by
Andrew Pattison
• 0
Thanks heaps Gordon. I went with option 1 and no normalisation and all seems to have worked well. Cheers, Andrew
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
Flagging protein groups as likely contaminants in this way will be fine for a limpa analysis. The `Cont_` proteins can optionally stay in f…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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