Bioconductor Copywriter

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copywriter slurm openMPI

updated 9.1 years ago by t.kuilman ▴ 170 • written 9.1 years ago by smcnulty • 0

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CopywriteR copy number

updated 9.1 years ago by t.kuilman ▴ 170 • written 9.1 years ago by smcnulty • 0

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copywriter

9.1 years ago MatthewGField ▴ 10

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bioconductor biocparallel copywriter

updated 7.7 years ago by Martin Morgan 25k • written 7.7 years ago by genomic8328 ▴ 10

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s4vectors copywriter

updated 6.9 years ago by Michael Lawrence ★ 11k • written 6.9 years ago by TriS ▴ 200

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CopywriteR

8.7 years ago Tom ▴ 10

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copynumber cnvtools cnv copywriteR

updated 8.6 years ago by t.kuilman ▴ 170 • written 8.7 years ago by ahinsahr11 • 0

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copywriter

updated 8.0 years ago by t.kuilman ▴ 170 • written 8.0 years ago by filipzembol • 0

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copywriter copynumber

updated 6.5 years ago by t.kuilman ▴ 170 • written 6.5 years ago by magdaaverte • 0

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copywriter cnv

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CopywriteR

updated 9.2 years ago by t.kuilman ▴ 170 • written 9.2 years ago by Felix • 0

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copywriter bin size targeted sequencing

updated 9.1 years ago by t.kuilman ▴ 170 • written 9.1 years ago by sshung • 0

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copywriter dnacopy

updated 9.1 years ago by t.kuilman ▴ 170 • written 9.1 years ago by jcarter • 0

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copywriter

updated 9.1 years ago by t.kuilman ▴ 170 • written 9.1 years ago by jcarter • 0

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copywriter bam

updated 8.8 years ago by t.kuilman ▴ 170 • written 8.8 years ago by thestaroceanster • 0

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CopywriteR

updated 11 months ago by fer_talavera • 0 • written 3.4 years ago by Joshua • 0

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CopywriteR CopyhelpeR

11 months ago fer_talavera • 0

17 results • Page 1 of 1

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

A: use tximport's countsFromAbundance when using DESeq2

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