Showing : correlation • reset
2
votes
7
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4.6k
views
How to create "trait data" file for WGCNA
wgcna coexpression correlation microarray
updated 8.2 years ago by ★ 3.0k • written 8.2 years ago by ▴ 20
4
votes
9
replies
3.3k
views
WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
WGCNA similarity correlation bioconductor rnaseq
updated 7.2 years ago by ★ 3.0k • written 7.2 years ago by ▴ 40
4
votes
7
replies
1.3k
views
Are spurious correlations possible in correlating two DESeq2 foldchanges computed using the same reference sample group?
deseq2 correlation
5.4 years ago Cornwell, Adam ▴ 110
15
votes
17
replies
23k
views
WGCNA: What is `soft thresholding`?
wgcna network analysis network correlation coexpression
updated 3.4 years ago by ▴ 730 • written 7.6 years ago by ▴ 40
4
votes
4
replies
1.4k
views
Correlation analysis taking into account multiple correlations
edger rna-seq correlation
updated 7.6 years ago by ▴ 270 • written 7.6 years ago by ▴ 10
0
votes
6
replies
1.5k
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 6.9 years ago by • 0 • written 7.2 years ago by ▴ 10
0
votes
1
reply
894
views
Human genes correlation to Bacterial genes
correlation pearsoncorrelation rna-seq differential gene expression
updated 4 months ago by ★ 4.0k • written 6.0 years ago by • 0
0
votes
1
reply
856
views
using WGCNA, positive or negative corrlation between genes composing modules.
correlation wgcna network
updated 4 months ago by • 0 • written 17 months ago by • 0
2
votes
4
replies
2.2k
views
Can DESeq correlate genes expression patterns with a numerical sample factor?
deseq2 correlation deseq linear
updated 8.7 years ago by ★ 7.9k • written 8.7 years ago by • 0
7
votes
3
replies
3.1k
views
plotting correlation between samples
correlation
updated 7.1 years ago by ★ 28k • written 7.1 years ago by ▴ 10
1
vote
2
replies
2.0k
views
Diffbind: how to include all the samples in the heatmap while using the contrast
diffbind heatmap correlation
updated 7.1 years ago by ★ 5.1k • written 7.1 years ago by • 0
2
votes
1
reply
837
views
Is there any prerequisites for taking correlation in genomic data?
correlation
updated 6.2 years ago by ▴ 420 • written 6.2 years ago by ▴ 20
0
votes
1
reply
1.1k
views
Differential Coexpression Analysis
differential analysis differential gene expression coexpression correlation
updated 6.1 years ago by ★ 3.0k • written 6.1 years ago by ▴ 20
4
votes
1
reply
1.5k
views
Best practice for correlating scRNA seq to bulkRNA seq data
seurat edgeR spearman correlation scRNAseq
updated 4.0 years ago by ★ 28k • written 4.0 years ago by ▴ 10
0
votes
1
reply
800
views
Correlation between two different datasets: between results of RNAseq and absence/presence of Type3 Secretion System
RNASeq Correlation DESeq2
updated 20 months ago by 41k • written 20 months ago by • 0
0
votes
1
reply
981
views
WGCNA correlation sign differences between eigen genes/ hub genes and clinical traits
hub correlation eigen WGCNA
updated 4 months ago by • 0 • written 2.4 years ago by • 0
3
votes
3
replies
1.4k
views
Correlation/clustering of numeric (continuous) and categorical values
correlation
updated 9.0 years ago by 21k • written 9.0 years ago by ★ 2.0k
0
votes
3
replies
1.2k
views
Coverage profile comparison
Targeted sequencing correlation coverage euclid clustering
5.5 years ago faramer86 • 0
0
votes
1
reply
1000
views
How can I do a correlation heatmap between two groups of matrices (metabolomic and transcriptomic data)
correlation
5.8 years ago adriana.gallego.02 ▴ 20
0
votes
2
replies
901
views
Correlation plot how to improve?
plot correlation
4.5 years ago annkolman78 • 0
1
vote
1
reply
997
views
spearman correlation
correlation sperarman
updated 2.6 years ago by ★ 4.0k • written 2.6 years ago by • 0
21 results • Page 1 of 1
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Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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