Showing : correlation • reset
15
votes
17
replies
23k
views
WGCNA: What is `soft thresholding`?
wgcna network analysis network correlation coexpression
updated 3.4 years ago by ▴ 730 • written 7.6 years ago by ▴ 40
7
votes
3
replies
3.1k
views
plotting correlation between samples
correlation
updated 7.1 years ago by ★ 28k • written 7.1 years ago by ▴ 10
4
votes
9
replies
3.3k
views
WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
WGCNA similarity correlation bioconductor rnaseq
updated 7.2 years ago by ★ 3.0k • written 7.2 years ago by ▴ 40
4
votes
1
reply
1.5k
views
Best practice for correlating scRNA seq to bulkRNA seq data
seurat edgeR spearman correlation scRNAseq
updated 4.0 years ago by ★ 28k • written 4.0 years ago by ▴ 10
4
votes
7
replies
1.3k
views
Are spurious correlations possible in correlating two DESeq2 foldchanges computed using the same reference sample group?
deseq2 correlation
5.4 years ago Cornwell, Adam ▴ 110
4
votes
4
replies
1.4k
views
Correlation analysis taking into account multiple correlations
edger rna-seq correlation
updated 7.6 years ago by ▴ 270 • written 7.6 years ago by ▴ 10
3
votes
3
replies
1.4k
views
Correlation/clustering of numeric (continuous) and categorical values
correlation
updated 9.0 years ago by 21k • written 9.0 years ago by ★ 2.0k
2
votes
4
replies
2.2k
views
Can DESeq correlate genes expression patterns with a numerical sample factor?
deseq2 correlation deseq linear
updated 8.7 years ago by ★ 7.9k • written 8.7 years ago by • 0
2
votes
1
reply
839
views
Is there any prerequisites for taking correlation in genomic data?
correlation
updated 6.2 years ago by ▴ 420 • written 6.2 years ago by ▴ 20
2
votes
7
replies
4.6k
views
How to create "trait data" file for WGCNA
wgcna coexpression correlation microarray
updated 8.2 years ago by ★ 3.0k • written 8.2 years ago by ▴ 20
1
vote
2
replies
2.0k
views
Diffbind: how to include all the samples in the heatmap while using the contrast
diffbind heatmap correlation
updated 7.1 years ago by ★ 5.1k • written 7.1 years ago by • 0
1
vote
1
reply
999
views
spearman correlation
correlation sperarman
updated 2.6 years ago by ★ 4.0k • written 2.6 years ago by • 0
0
votes
1
reply
864
views
using WGCNA, positive or negative corrlation between genes composing modules.
correlation wgcna network
updated 4 months ago by • 0 • written 17 months ago by • 0
0
votes
6
replies
1.5k
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 6.9 years ago by • 0 • written 7.2 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Differential Coexpression Analysis
differential analysis differential gene expression coexpression correlation
updated 6.1 years ago by ★ 3.0k • written 6.1 years ago by ▴ 20
0
votes
1
reply
898
views
Human genes correlation to Bacterial genes
correlation pearsoncorrelation rna-seq differential gene expression
updated 4 months ago by ★ 4.0k • written 6.0 years ago by • 0
0
votes
1
reply
1.0k
views
How can I do a correlation heatmap between two groups of matrices (metabolomic and transcriptomic data)
correlation
5.8 years ago adriana.gallego.02 ▴ 20
0
votes
3
replies
1.2k
views
Coverage profile comparison
Targeted sequencing correlation coverage euclid clustering
5.5 years ago faramer86 • 0
0
votes
2
replies
903
views
Correlation plot how to improve?
plot correlation
4.5 years ago annkolman78 • 0
0
votes
1
reply
805
views
Correlation between two different datasets: between results of RNAseq and absence/presence of Type3 Secretion System
RNASeq Correlation DESeq2
updated 20 months ago by 41k • written 20 months ago by • 0
0
votes
1
reply
984
views
WGCNA correlation sign differences between eigen genes/ hub genes and clinical traits
hub correlation eigen WGCNA
updated 4 months ago by • 0 • written 2.4 years ago by • 0
21 results • Page 1 of 1
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Replies
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0
Dear Michael, I tried all three ways (the orIginal, increasing the number of required samples,and subsetting (the countdata and metadata be…
Comment: DESeq2 - dispersion estimation when there is none by Michael Love 41k
The red line does assume that shape but the fact the black points show that pattern is discussed in the 2014 paper. > Some caution is warr…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k
I don't really follow what you are saying. All you have to do is delete the NCBI.sqlite db and *re-run the script exactly as you did above.…
Comment: Methylation Analysis experiment design using Limma by hortense96 • 0
Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…
Comment: Limma design with continuous and categorical covariates by hortense96 • 0
Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …
Votes
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
Answer: OrgDb for maize
Answer: DESeq2 - dispersion estimation when there is none
Comment: Cannabis and KEGGgraph
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