Bioconductor Covariate

Showing : covariate • reset

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1.5k

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limma paired covariate

updated 7.9 years ago by Steve Lianoglou ★ 13k • written 7.9 years ago by meeta.mistry ▴ 30

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4.6k

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limma reference group covariate

9.3 years ago alakatos ▴ 130

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2.5k

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limma pre/post continous covariate

8.3 years ago Smeeta Shrestha ▴ 20

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3.6k

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edger contrast covariate glmlrt()

7.0 years ago Jeff Skinner • 0

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6.4k

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limma covariate continuous categorical adjustment

updated 8.8 years ago by Gordon Smyth 50k • written 8.8 years ago by sg45653 • 0

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4.7k

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covariate deseqdataset Deseq2 multiple factor design

updated 8.7 years ago by Michael Love 41k • written 8.7 years ago by Lillyhchen ▴ 10

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1.4k

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limma methylation R covariate MDS

updated 7.0 years ago by Aaron Lun ★ 28k • written 7.0 years ago by RC • 0

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1.1k

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limma covariate

updated 5.0 years ago by Gordon Smyth 50k • written 5.0 years ago by scheran02 • 0

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1.1k

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DEG deseq2 Covariate

updated 4.9 years ago by Michael Love 41k • written 4.9 years ago by sum732 • 0

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820

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deseq2 DEG covariate study design variables

updated 4.1 years ago by Michael Love 41k • written 4.1 years ago by Yonatan Amzaleg • 0

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5.1k

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limma spline design and contrast matrix covariate

updated 8.7 years ago by Aaron Lun ★ 28k • written 8.7 years ago by Hilary ▴ 30

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3.1k

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limma covariate block paired samples technical replicates

updated 8.4 years ago by Aaron Lun ★ 28k • written 8.4 years ago by eleonoregravier ▴ 70

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2.4k

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edger differential expression covariate batch effect glm

updated 8.3 years ago by Gordon Smyth 50k • written 8.3 years ago by aec ▴ 90

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5.0k

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RNA rnaseq Covariate adjustment deseq

updated 8.1 years ago by Michael Love 41k • written 8.1 years ago by sjs0282 • 0

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2.0k

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limma voom batcheffect covariate

updated 7.0 years ago by Gordon Smyth 50k • written 7.0 years ago by raf4 ▴ 20

15 results • Page 1 of 1

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Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …

Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

Votes

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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Popular Question to James W. MacDonald 65k