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medip-seq createset

updated 3.4 years ago by Bioconductor Community 0 • written 3.5 years ago by oussama.badad • 0

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medips createset

updated 3.5 years ago by Lukas Chavez ▴ 570 • written 3.5 years ago by oussama.badad • 0

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medips createset

6.6 years ago • updated 6.5 years ago Vanilla • 0

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Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values by wahaha • 0

I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…

Answer: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…

Comment: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…

Comment: Rsamtools is not available for (for R version 4.0.2) by olinares-perdomo • 0

I had the same problem (R 4.2.0) I used BiocManager::install("Rsamtools", force = TRUE) And it is working fine

Comment: Confused about the design matrix in edgeR: How to tell R to consider one level a by Gordon Smyth 45k

When I answered your original question, I assumed you would use the simplest possible code ``` Status <- factor(Sample_info$Status) ``` w…

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