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medip-seq createset

updated 5.3 years ago by Bioconductor Community 0 • written 5.4 years ago by oussama.badad • 0

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medips createset

updated 5.4 years ago by Lukas Chavez ▴ 570 • written 5.4 years ago by oussama.badad • 0

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medips createset

8.5 years ago • updated 8.4 years ago Vanilla • 0

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Comment: DESeq2 setting significant p-value by Michael Love 41k

``` > counts <- matrix(1:16, ncol=4, dimnames=list(letters[1:4],NULL)) > coldata <- data.frame(x=1:4) > DESeqDataSetFromMatrix(counts, cold…

Comment: DESeq filtering specific to contrasts by Michael Love 41k

Right, I was suggesting subsetting as a valid choice for "treatment and control samples at each timepoint"

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Fair enough, I guess it depends on the comparison being made, right? If one was interested in a feature comparing Timepoint A vs B, then it…

Comment: DESeq2 setting significant p-value by Dev • 0

Sir but when I put in the expression data via the csv file, it was showing the gene names then but now when i set it in the form factor it …

Answer: OrgDb for maize by James W. MacDonald 65k

``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% snapshotDate(): 2023-10-23 > query(hu…

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A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

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