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crispr
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Job:
Research Scientists/Postdoctoral Candidates/Computational Biologists and Programmers excited about computational challenges in modeling CRISPR genome…
CRISPR
SingleCell
Genomics
3.1 years ago
lpinello
• 0
0
votes
2
replies
1.8k
views
Using edgeR to analyze Cripsr/Cas9 Screening data
edger
processamplicons
sgrna
crispr
updated 20 months ago by
hyejo
• 0 • written 6.6 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
3
replies
1.2k
views
Independent filtering of NGS data
independentfiltering
DESeq2
CRISPR
3.8 years ago • updated 3.7 years ago
Rubén
• 0
6
votes
14
replies
2.3k
views
gRNAefficacy calculations in CRISPRseek
crisprseek
crispr
gRNAefficacy
grna
updated 4.2 years ago by
Julie Zhu
★ 4.3k • written 4.2 years ago by
Dawid G. Nowak
▴ 40
1
vote
0
replies
1.1k
views
Job:
Postdoc/Bioinformatician Research Fellow @ Harvard Medical School/MGH/ Boston's Children Hospital
CRISPR
functional genomics
single cell
gene regulatory networks
Job
4.2 years ago
bauer
▴ 10
0
votes
0
replies
1.2k
views
Job:
Scientist 1, Bioinformatics (Research | Berkeley, CA | Full Time)
Bioinformatics
drug-discovery
RNA-seq
CRISPR
Job
4.2 years ago
yzhang
• 0
0
votes
19
replies
2.5k
views
Help with using CRISPRseeker
CRISPR
updated 5.2 years ago by
Julie Zhu
★ 4.3k • written 5.2 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
1.6k
views
EdgeR: run processAmplicons without barcodes
EdgeR
CRISPR
Barcode
processamplicons
updated 6.5 years ago by
sdalin
• 0 • written 7.6 years ago by
neggersjasper
• 0
0
votes
4
replies
2.4k
views
Adaptation of DESeq/edgeR model for CRISPR drop-out screen
crispr
edger
deseq
deseq2
updated 7.0 years ago by
Aaron Lun
★ 28k • written 7.0 years ago by
emanuelvgoncalves
• 0
0
votes
2
replies
1.5k
views
How to start CrispRVariants with fastq file starting point
R
crispr
fastq
7.9 years ago
kfburbach
• 0
0
votes
6
replies
2.0k
views
Manipulating random CRISPR sequences
r
crispr
updated 8.4 years ago by
mousheng xu
▴ 10 • written 9.0 years ago by
shane
• 0
1
vote
1
reply
1.5k
views
CRISPRseek R package: description of output fields that are unclear
crisprseek
R
CRISPR
sgRNA
updated 8.8 years ago by
Julie Zhu
★ 4.3k • written 8.8 years ago by
alexgraehl
▴ 20
2
votes
27
replies
4.5k
views
CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek
sgrna
crispr
cas9
R
9.1 years ago • updated 9.0 years ago
alexgraehl
▴ 20
13 results • Page
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Answer: single cell RNA seq pseudobulk batch correction
by
James W. MacDonald
67k
You can exclude the females from the non-responders.
Answer: Normalized counts to be used in decoupleR from deseq2 results
by
James W. MacDonald
67k
No, you never use normalized counts for anything but plotting. Can you point out the example that uses normalized counts?
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
James W. MacDonald
67k
If you care to know more about the process, there is a [GitHub with all the code][1]. It's pretty complicated though - the readme alone is …
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
Guido Hooiveld
★ 4.1k
Thanks; I did not know which file exactly is being used. Good catch regarding the discrepancy between the 2 web pages. I will get in touch …
Answer: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
James W. MacDonald
67k
The data for the `OrgDb` packages comes directly from NCBI, and in this case the symbols come from the gene_info.gz file you [can get from …
Votes
Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
Comment: limma technical repeat correction
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