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crispr
•
reset
2
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27
replies
3.9k
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CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek
sgrna
crispr
cas9
R
8.5 years ago • updated 8.4 years ago
alexgraehl
▴ 20
0
votes
19
replies
2.2k
views
Help with using CRISPRseeker
CRISPR
updated 4.6 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
sharvari gujja
▴ 40
6
votes
14
replies
2.0k
views
gRNAefficacy calculations in CRISPRseek
crisprseek
crispr
gRNAefficacy
grna
updated 3.6 years ago by
Julie Zhu
★ 4.3k • written 3.6 years ago by
Dawid G. Nowak
▴ 40
0
votes
6
replies
1.8k
views
Manipulating random CRISPR sequences
r
crispr
updated 7.9 years ago by
mousheng xu
▴ 10 • written 8.5 years ago by
shane
• 0
0
votes
4
replies
2.1k
views
Adaptation of DESeq/edgeR model for CRISPR drop-out screen
crispr
edger
deseq
deseq2
updated 6.5 years ago by
Aaron Lun
★ 28k • written 6.5 years ago by
emanuelvgoncalves
• 0
2
votes
3
replies
1.0k
views
Independent filtering of NGS data
independentfiltering
DESeq2
CRISPR
3.2 years ago
Rubén
• 0
0
votes
2
replies
1.5k
views
Using edgeR to analyze Cripsr/Cas9 Screening data
edger
processamplicons
sgrna
crispr
updated 14 months ago by
hyejo
• 0 • written 6.1 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.3k
views
How to start CrispRVariants with fastq file starting point
R
crispr
fastq
7.4 years ago
kfburbach
• 0
0
votes
1
reply
1.4k
views
EdgeR: run processAmplicons without barcodes
EdgeR
CRISPR
Barcode
processamplicons
updated 5.9 years ago by
sdalin
• 0 • written 7.1 years ago by
neggersjasper
• 0
1
vote
1
reply
1.4k
views
CRISPRseek R package: description of output fields that are unclear
crisprseek
R
CRISPR
sgRNA
updated 8.2 years ago by
Julie Zhu
★ 4.3k • written 8.2 years ago by
alexgraehl
▴ 20
0
votes
0
replies
700
views
Job:
Research Scientists/Postdoctoral Candidates/Computational Biologists and Programmers excited about computational challenges in modeling CRISPR genome…
CRISPR
SingleCell
Genomics
2.5 years ago
lpinello
• 0
0
votes
0
replies
967
views
Job:
Scientist 1, Bioinformatics (Research | Berkeley, CA | Full Time)
Bioinformatics
drug-discovery
RNA-seq
CRISPR
Job
3.7 years ago
yzhang
• 0
1
vote
0
replies
910
views
Job:
Postdoc/Bioinformatician Research Fellow @ Harvard Medical School/MGH/ Boston's Children Hospital
CRISPR
functional genomics
single cell
gene regulatory networks
Job
3.7 years ago
bauer
▴ 10
13 results • Page
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Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures
by
Gordon Smyth
50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
• 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
Comment: Single-Cell Data Simulation from Bulk RNA-seq
by
wichaidi
• 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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