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crlmm
•
reset
1
vote
6
replies
2.0k
views
Copy number analysis from Illumina 550K chip
illumina
copynumber
crlmm
8.4 years ago
stuti.agrawal
• 0
0
votes
7
replies
1.4k
views
problem to compute copy number with crlmm
GLAD
crlmm
GLAD
crlmm
updated 14.4 years ago by
Rob Scharpf
▴ 250 • written 14.4 years ago by
Sören Gröttrup
▴ 40
11
votes
23
replies
2.5k
views
crlmm support for Illumina arrays with no annotation package?
crlmm
QCarray
annotation
updated 4.2 years ago by
milo.yanez20
• 0 • written 4.4 years ago by
deanpett
▴ 30
0
votes
4
replies
1.3k
views
Trouble following the first 5 lines of vanillaICE tutorial?
SNP6
crlmm
vanillaice
vanillaice crlmm
cnv
updated 8.9 years ago by
rscharpf
• 0 • written 8.9 years ago by
cafelumiere12
▴ 20
0
votes
8
replies
1.5k
views
crlmm warning
oligo
crlmm
oligo
crlmm
updated 17.1 years ago by
Benilton Carvalho
★ 4.3k • written 17.1 years ago by
Morten Mattingsdal
▴ 190
1
vote
4
replies
1.4k
views
crlmm crossprod error, and missing files in annotation
crlmm
updated 8.6 years ago by
Matthew Ritchie
▴ 1000 • written 8.6 years ago by
andrew.j.skelton73
▴ 370
0
votes
2
replies
997
views
pdInfoBuilder -- MOUSEDIVm520650
Annotation
pdInfoBuilder
crlmm
Annotation
pdInfoBuilder
crlmm
updated 13.8 years ago by
James W. MacDonald
65k • written 13.8 years ago by
Ivanek, Robert
▴ 100
0
votes
2
replies
833
views
crlmm - computeCopynumber error
crlmm
crlmm
updated 14.9 years ago by
Rob Scharpf
▴ 250 • written 14.9 years ago by
Christian Ruckert
▴ 170
2
votes
4
replies
1.6k
views
Crlmm HumanOmniExpress-24v1 Annotation not available
crlmm
updated 5.8 years ago by
lack.justin
• 0 • written 8.6 years ago by
andrew.j.skelton73
▴ 370
1
vote
5
replies
1.9k
views
CRLMM on Illumina Human1Mv1_C chips
crlmm
illumina
beadarraysnp
updated 9.1 years ago by
Matthew Ritchie
▴ 1000 • written 9.1 years ago by
René
▴ 30
0
votes
6
replies
1.5k
views
QC Affy 6.0 SNP arrays with crlmm or Oligo?
Normalization
oligo
crlmm
Normalization
oligo
crlmm
updated 14.0 years ago by
Benilton Carvalho
★ 4.3k • written 14.0 years ago by
jeremy wilson
▴ 150
0
votes
1
reply
865
views
Interpretation of genotype calls from Oligo crlmm algorithm
SNP
oligo
crlmm
SNP
oligo
crlmm
updated 14.0 years ago by
Benilton Carvalho
★ 4.3k • written 14.0 years ago by
jeremy wilson
▴ 150
0
votes
1
reply
790
views
(no subject)
crlmm
crlmm
updated 13.8 years ago by
Wolfgang Huber
★ 13k • written 13.8 years ago by
emilie sohier
▴ 60
0
votes
1
reply
879
views
crlmm and snpMatrix
snpMatrix
crlmm
snpMatrix
crlmm
updated 13.8 years ago by
Benilton Carvalho
★ 4.3k • written 13.8 years ago by
Tim Rayner
▴ 270
0
votes
5
replies
1.4k
views
crlmm package help for copy number affymetrix snp 6.0
SNP
crlmm
SNP
crlmm
updated 13.8 years ago by
Benilton Carvalho
★ 4.3k • written 13.8 years ago by
emilie sohier
▴ 60
0
votes
1
reply
1.8k
views
Reading Illumina IDAT files
crlmm
crlmm
updated 13.8 years ago by
Matthew Ritchie
▴ 1000 • written 13.8 years ago by
Mark Cowley
▴ 910
0
votes
1
reply
1.4k
views
beadarray illumina Human610-Quadv1_B.bpm
crlmm
crlmm
updated 13.7 years ago by
Matthew Ritchie
▴ 1000 • written 13.7 years ago by
Nolwenn Le Meur
▴ 80
0
votes
3
replies
1.6k
views
crlmm and cluster centres error
crlmm
crlmm
updated 13.5 years ago by
Benilton Carvalho
★ 4.3k • written 13.5 years ago by
Ricardo Vidal
▴ 50
0
votes
3
replies
895
views
Oligo package crlmm method
SNP
oligo
crlmm
SNP
oligo
crlmm
updated 13.5 years ago by
Benilton Carvalho
★ 4.3k • written 13.5 years ago by
Julie Zhu
★ 4.3k
0
votes
2
replies
1.3k
views
Question on copy number estimation for Affymetrix SNP array 100k and 500k
SNP
crlmm
genoCN
SNP
crlmm
genoCN
updated 13.5 years ago by
Henrik Bengtsson
★ 2.4k • written 13.5 years ago by
Julie Zhu
★ 4.3k
0
votes
1
reply
1.0k
views
crlmm package and allele-specific CNV with Illumina SNP arrays
SNP
crlmm
SNP
crlmm
updated 13.5 years ago by
Rob Scharpf
▴ 250 • written 13.5 years ago by
Zoppoli, Gabriele NIH/NCI [G]
▴ 20
0
votes
6
replies
2.0k
views
CRLMM: Error in quantile.default(M, c(1, 5)/6, names = FALSE)
crlmm
updated 6.8 years ago by
Matthew Ritchie
▴ 1000 • written 7.6 years ago by
komal.rathi
▴ 120
0
votes
1
reply
1.1k
views
Bug?: crlmm and cdfName not valid
software error
crlmm
updated 7.5 years ago by
Matthew Ritchie
▴ 1000 • written 7.5 years ago by
mcgaugheyd
• 0
0
votes
2
replies
980
views
"oligo" crashes in windows XP
SNP
GO
affyio
oligo
crlmm
SNP
GO
affyio
oligo
crlmm
updated 17.2 years ago by
Benilton Carvalho
★ 4.3k • written 17.2 years ago by
Morten Mattingsdal
▴ 190
0
votes
3
replies
732
views
How to use CRLMM with Affy 5.0 arrays
crlmm
crlmm
updated 15.6 years ago by
Benilton Carvalho
★ 4.3k • written 15.6 years ago by
Dominik Seelow
▴ 20
0
votes
1
reply
1.1k
views
about: analyze 250K sty SNP array
crlmm
crlmm
updated 15.5 years ago by
Henrik Bengtsson
★ 2.4k • written 15.5 years ago by
Zhang, Hailei
▴ 10
0
votes
1
reply
1.2k
views
(CRLMM) an issue needs to be clarified
SNP
affy
crlmm
SNP
affy
crlmm
15.1 years ago
Ping-Hsun Hsieh
▴ 30
0
votes
1
reply
1.5k
views
crlmm and Illumina Infinium arrays
crlmm
crlmm
updated 14.9 years ago by
Matthew Ritchie
▴ 1000 • written 14.9 years ago by
Christian Ruckert
▴ 170
0
votes
1
reply
775
views
Error using crlmm
Normalization
affy
crlmm
Normalization
affy
crlmm
updated 14.8 years ago by
Benilton Carvalho
★ 4.3k • written 14.8 years ago by
mcoyne@boninc.com
▴ 50
0
votes
3
replies
1.5k
views
Error: All CEL files must be of the same type when running CRLMM
SNP
crlmm
SNP
crlmm
updated 14.8 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.8 years ago by
mcoyne@boninc.com
▴ 50
0
votes
1
reply
1.2k
views
crlmm with Illumina arrays
crlmm
crlmm
updated 14.1 years ago by
Benilton Carvalho
★ 4.3k • written 14.1 years ago by
Lavinia Gordon
▴ 480
0
votes
1
reply
1.3k
views
crlmm - Infinium iSelect HD Custom Genotyping
SNP
beadarray
crlmm
SNP
beadarray
crlmm
updated 13.3 years ago by
Matthew Ritchie
▴ 1000 • written 13.3 years ago by
Richard Finkers
▴ 20
0
votes
2
replies
1.1k
views
crlmm error in Mac OS
oligo
crlmm
oligo
crlmm
updated 13.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.1 years ago by
Steven Buechler
▴ 10
0
votes
1
reply
943
views
CRLMM warning message and null results
crlmm
crlmm
updated 12.6 years ago by
Benilton Carvalho
★ 4.3k • written 12.6 years ago by
Jenna Cameron
▴ 10
0
votes
2
replies
1.2k
views
Analysis with SnpSet object CRLMM package
crlmm
crlmm
updated 12.3 years ago by
Benilton Carvalho
★ 4.3k • written 12.3 years ago by
Chintan Vora - Xcelris
▴ 70
0
votes
1
reply
1.0k
views
ilumina CanineHD
cdf
crlmm
cdf
crlmm
updated 12.2 years ago by
Matthew Ritchie
▴ 1000 • written 12.2 years ago by
Vidhya Gnanasekaran
▴ 10
0
votes
4
replies
2.3k
views
genotyping output files
PROcess
SNPchip
crlmm
PROcess
SNPchip
crlmm
12.2 years ago
Rafiq S.
▴ 20
0
votes
1
reply
1.5k
views
Copy Number Analysis across multiple SNP array plaforms
SNP
Cancer
crlmm
ffpe
SNP
Cancer
crlmm
ffpe
updated 11.9 years ago by
Djork Clevert
▴ 210 • written 11.9 years ago by
Ed Schwalbe
▴ 20
0
votes
1
reply
1.2k
views
boxplot/histograms on preprocessed SNP affy data with crlmm package
SNP
oligo
crlmm
SNP
oligo
crlmm
updated 11.8 years ago by
Benilton Carvalho
★ 4.3k • written 11.8 years ago by
Javier Pérez Florido
▴ 840
0
votes
1
reply
1.2k
views
crlmm Illumina cdfName "human1mv1c" not valid
crlmm
crlmm
updated 11.7 years ago by
Rob Scharpf
▴ 250 • written 11.7 years ago by
Richard Thompson
▴ 10
0
votes
3
replies
4.6k
views
Translating AB/BB/AA into a SNP with Illumina data
SNP
crlmm
SNP
crlmm
updated 11.7 years ago by
Stephanie M. Gogarten
▴ 870 • written 11.7 years ago by
Lavinia Gordon
▴ 480
0
votes
1
reply
1.5k
views
Crlmm package
SNP
Annotation
Normalization
crlmm
SNP
Annotation
Normalization
crlmm
updated 11.1 years ago by
Matthew Ritchie
▴ 1000 • written 11.1 years ago by
khadeeja ismail
▴ 400
0
votes
1
reply
771
views
how to use the confs value in crlmm
crlmm
crlmm
updated 11.1 years ago by
Benilton Carvalho
★ 4.3k • written 11.1 years ago by
Guest User
★ 13k
0
votes
2
replies
1.4k
views
crlmm problem
SNP
beadarray
crlmm
SNP
beadarray
crlmm
10.2 years ago
Aaerp
▴ 40
0
votes
1
reply
2.1k
views
crlmm : copy number and genotyping of Illumina data
SNP
Annotation
Normalization
crlmm
copynumber
SNP
Annotation
Normalization
crlmm
updated 10.1 years ago by
Matthew Ritchie
▴ 1000 • written 10.1 years ago by
Abhishek Pratap
▴ 160
0
votes
6
replies
2.5k
views
crlmm : copy number and genotyping of Illumina data
SNP
Annotation
Normalization
crlmm
copynumber
SNP
Annotation
Normalization
crlmm
updated 9.8 years ago by
Matthew Ritchie
▴ 1000 • written 9.8 years ago by
Abhishek Pratap
▴ 160
0
votes
1
reply
1.4k
views
CRLMM for Affymetrix Axiom Genome-Wide Population-Optimized Human Arrays
crlmm
axiom
updated 9.4 years ago by
Benilton Carvalho
★ 4.3k • written 9.4 years ago by
simpsoncl
• 0
0
votes
1
reply
1.4k
views
NAs with rawCopynumber() and discrepancies with estimated computed in parallel
crlmm
copynumber
9.1 years ago
kforner
• 0
0
votes
2
replies
1.9k
views
reading .idat files using genotype.Illumina in crlmm
crlmm
idat
updated 8.8 years ago by
Matthew Ritchie
▴ 1000 • written 8.8 years ago by
Shi, Tao
▴ 720
0
votes
1
reply
1.3k
views
"genomdat must be numeric" error form DNACopy package
software error
dnacopy
crlmm
updated 8.8 years ago by
James W. MacDonald
65k • written 8.8 years ago by
perdomos
• 0
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