Bioconductor Crosscorrelation

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chipseq csaw; crosscorrelation

2.6 years ago • updated 2.5 years ago richardallenfriedmanbrooklyn • 0

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Comment: 'Subtracting' counts on basis of Negative control media and water samples by Karthik • 0

I have entered the picture only in the analysis stage - the sequencing has all been performed and done. > Besides, likely the noise level…

Comment: NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R by James W. MacDonald 64k

It does look like CBP2 is an HGNC symbol, not a protein ID though. ``` > z <- select(ws, "CPB2", c("gene_names","xref_geneid","xref_ensemb…

Comment: How can I avoid artifacts in gene set/pathway scoring by UCell and similar algor by arina • 0

Hi Omer, Unfortunately I don't have an answer to your issue, but I am facing a very similar problem after integrating datasets that were …

Answer: NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R by James W. MacDonald 64k

I don't know what you mean by 'cDNA value'. That could mean any number of things, I suppose, particularly if you don't know what cDNA is (p…

Comment: How can we use the organism database created by makeorgPackageFromNCBI to KEGG a by Guido Hooiveld ★ 3.8k

What did you try yourselves? Again, please show your code....!! For KEGG-based analysis you can make use of the convenience functions `enr…

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Comment: Ensembl down???

Comment: Problem loading HDF5Array in R 4.3.2

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