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Comment: Subsetting operation on CompressedGRangesList object 'x' produces a result tha
by
Jiping Wang
▴
70
Hi H.
Do you have any clues what the bug or problem could be? thanks.
Jiping
Answer: DESeq2 paired design: Differential list comparing fold changes
by
swbarnes2
★
1.0k
Sounds like you want interactions:
http://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#interactions
Comment: TPM data Differential expression analysis
by
hnthirim
▴
10
Hi @gordonsmyth,
Question on your above answer: I have logTPM normalized data. Can I perform DE analysis using it on EdgeR, instead of in…
Comment: rtracklayer S.h
by
gibran
•
0
Thanks, much appreciated. So I think this approach actually gets binaries and I'm not sure how to isolate the problem I was experiencing as…
Comment: DESeq2, Calculate the size factor by using median-of-ratio
by
KEREN
•
0
Hi Michael, thank you for you reply.
My concern here mainly focus on the high variances in samples of condition "mESC_mRNA_WT". I observed…
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