Biostar Cuffdiff

Showing : cuffdiff • reset

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2.2k

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dexseq bitseq cuffdiff Differential exon usage isoforms

7.8 years ago elle ▴ 10

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1.8k

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SpliceR Cuffdiff

updated 7.5 years ago by deppt002 • 0 • written 7.8 years ago by mfahim • 0

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1.3k

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cummeRbund Script analysis RNAseq cuffdiff

updated 7.9 years ago by andrew.j.skelton73 ▴ 360 • written 7.9 years ago by mfahim • 0

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2.7k

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htseqtools deseq2 counts cuffdiff

7.1 years ago Jon Bråte ▴ 240

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1.9k

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RNA-seq / XLOC cuffdiff

updated 14 months ago by Lan • 0 • written 2.9 years ago by mg.mahabad1365 • 0

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1.1k

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GAGE Cuffdiff gene names

updated 7.3 years ago by Luo Weijun ★ 1.6k • written 7.3 years ago by user31888 ▴ 30

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829

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kegg readcufflinks cuffdiff cuff

updated 5.4 years ago by thokall ▴ 160 • written 5.4 years ago by pierre.biojoux • 0

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1.4k

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deseq2 cuffdiff

updated 7.8 years ago by Michael Love 39k • written 7.8 years ago by a.de-giorgio12 • 0

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960

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WGCNA cuffdiff

4.5 years ago sbbinfo90 • 0

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842

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cuffdiff sqlite

5.3 years ago handgabriel • 0

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979

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deseq2 cuffdiff differential gene expression

7.7 years ago Assa Yeroslaviz ★ 1.5k

11 results • Page 1 of 1

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Comment: Merging samples from different sequencing runs by Zainab • 0

Thanks Michael! I've included the factors of unwanted variation to get the PCA plot on the right. Is that a suitable approach to combine re…

Comment: How to adjust plots generated using psygenet2r? by helucro ▴ 70

It's a base R plot, so you can not modify it post-generation. Running the `psygenetGene` doc example... ``` library(psygenet2r) data(qr, pa…

Comment: Multifactorial Design for DESEQ2 by ATpoint ★ 2.4k

There is a section in the vignette that covers interactions and (depending on use case) how one can do a full factorial design to make inte…

Answer: Multifactorial Design for DESEQ2 by Michael Love 39k

For questions about the experimental design, I recommend to consult with a local statistician. I have to reserve my time on the support sit…

Answer: Merging samples from different sequencing runs by Michael Love 39k

We often use RUV in the lab, and you would include the factors of unwanted variation in the design formula. See the workflow for example co…

Votes

A: Deseq2: RNA-seq and Negative binomial distribution

A: DESeq2 and shrinkage of log2 fold changes

Filtering low variance genes for WGCNA

Calculation of module membership in WGCNA

A: converting ensembl transcript ID to ensemble gene: problem & missing values

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Popular Question to Dario Strbenac ★ 1.5k