Showing : cummerbund • reset
0
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reply
327
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cuffdiff-CummeRbund error
cummeRbund cufflink cuffdiff
updated 8 months ago by 65k • written 9 months ago by • 0
0
votes
1
reply
614
views
Check the CummeRbund PDF.
cummeRbund
updated 22 months ago by 3.8k • written 22 months ago by • 0
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0
replies
597
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Problems with library(cummeRbund)
cummeRbund
updated 4.0 years ago by 3.8k • written 4.0 years ago by • 0
0
votes
0
replies
689
views
Problems with cummeRbund
plot transcriptomics differential expression cummeRbund
4.1 years ago raquelponti • 0
0
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0
replies
630
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Error in readCufflinks
cummeRbund
5.0 years ago jerviedog • 0
0
votes
0
replies
800
views
0 values in cuff_data file from cummeRbund
cummeRbund cuff_data rnaseq cuffset
5.9 years ago alexandra.holden.2015 • 0
0
votes
1
reply
1.1k
views
Warning message RSQLite::Id in CummeRbund
bioconductor rnaseq cummerbund
updated 5.9 years ago by 65k • written 5.9 years ago by • 0
0
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0
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1.1k
views
CuffSet instance with 0 samples
cummerbund sqlite readcufflinks
6.0 years ago eculfa • 0
0
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0
replies
929
views
cummeRbund MA plot and csScatter error
cummerbund
6.1 years ago seyfim • 0
0
votes
0
replies
917
views
problems with using cummeRbund
cummerbund
6.3 years ago sneha108ss • 0
3
votes
6
replies
1.8k
views
cummeRbund installation fails
bioconductor cummerbund software error GenomicFeatures
updated 6.3 years ago by 25k • written 6.4 years ago by ▴ 30
0
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0
replies
979
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Some modifications of cummeRbund to fit RSQLite 2.0
cummerbund
6.4 years ago C.K. Shiau • 0
0
votes
1
reply
1.2k
views
cummeRbund problem in creating database
cummerbund data run error
6.5 years ago majeedaasim • 0
0
votes
1
reply
1.5k
views
cummeRbund error: Column name mismatch.
cummeRbund
6.6 years ago sdhutchins • 0
1
vote
1
reply
1.2k
views
Installing old versions of cummeRbund
rna-seq cummerbund
updated 6.7 years ago by 65k • written 6.7 years ago by • 0
0
votes
4
replies
1.8k
views
Failure to load cufflinks data into cummeRbund
cummerbund
6.7 years ago rhart • 0
0
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0
replies
1.2k
views
Cummerbund differential expression data analysis package issue
rna-seq cummerbund
updated 6.7 years ago by 3.8k • written 6.7 years ago by • 0
2
votes
6
replies
3.5k
views
problem with cummeRbund using latest R version
cummeRbund
updated 6.6 years ago by • 0 • written 6.8 years ago by • 0
2
votes
1
reply
1.9k
views
Cummerbund error column name mismatch
cummerbund bug error
6.8 years ago tannerndrsn4 ▴ 20
0
votes
0
replies
921
views
CummeRbund fail with example directory
cummerbund readcufflinks
6.8 years ago tommy.vo • 0
0
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0
replies
944
views
CummeRbund returns 0 genes
cummeRbund rna seq anaylsis r cufdiff
6.8 years ago bhagyathimmappa • 0
11
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25
replies
11k
views
readCufflinks problem with extdata
cummerbund
updated 6.6 years ago by ▴ 10 • written 6.8 years ago by ▴ 40
0
votes
2
replies
1.3k
views
Color specific genes in cummeRbund scatterplot
cummerbund
updated 6.8 years ago by ▴ 110 • written 6.8 years ago by • 0
0
votes
3
replies
2.6k
views
error installing cummeRbund in R studio (Windows desktop)
Rstudio cummerbund error
6.9 years ago mszskb • 0
0
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0
replies
1.2k
views
CummeRbund volcano plot infinite values
cummerbund rnaseq
6.9 years ago niu.shengyong • 0
0
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4
replies
2.0k
views
Errror cummeRbund installation
cummerbund annotationfilter
6.9 years ago esraesmeray1990 • 0
0
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0
replies
1.8k
views
use control_condition in heatmap with cummeRbund
cummerbund heatmap
7.1 years ago domenico.somma • 0
1
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2
replies
1.1k
views
How to transform edgeR output into a cummeRbund object?
edgeR cummeRbund
7.1 years ago alakatos ▴ 130
0
votes
0
replies
1.5k
views
cummeRbund heatmap for specific isoforms (not genes)
cummerbund heatmap isoforms transcript_id
7.1 years ago domenico.somma • 0
0
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2
replies
1.1k
views
Problem with cummeRbund
rstudio cummerbund
7.1 years ago sanathoi.guru • 0
0
votes
0
replies
976
views
cummeRbund error dealing with cuffdiff results
rnaseq cummerbund R software error
7.2 years ago wastdc • 0
4
votes
4
replies
1.5k
views
How to isolate gene from a single chromosome, RNA Seq experiment, using R package ?
rnaseq r cummerbund
updated 7.4 years ago by 50k • written 7.4 years ago by • 0
0
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0
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1.1k
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Error in CummeRbund when using myGenes<-getGenes(cuff,myGeneIds)
cummerbund
7.7 years ago juafonso_bio • 0
0
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1
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1.5k
views
csHeatmap - how to adjust order and number of genes displayed or change the size of the plot
cummerbund
updated 7.7 years ago by ▴ 420 • written 7.7 years ago by • 0
0
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0
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954
views
CummeRbund Expression Bar Plot
cummerbund rnaseq
7.8 years ago k1064622 • 0
3
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4
replies
1.6k
views
Cannot install CummeRbund on R v.3.3.0
cummeRbund RNA-Seq
7.8 years ago eihpos76mm • 0
1
vote
1
reply
1.4k
views
Cannot install CummeRbund on R version 3.0.2 (2013-09-25)
cummerbund
updated 7.8 years ago by 25k • written 7.8 years ago by • 0
1
vote
3
replies
1.7k
views
spliceR error with GTF cummeRbund input
splicer cummerbund
updated 6.8 years ago by • 0 • written 7.9 years ago by ▴ 10
0
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0
replies
908
views
cummeRbund - package( fpkmSCVPlot)
cummerbund fpkmsvplot
7.9 years ago yunlongjia • 0
0
votes
0
replies
1.2k
views
error while running MAplot
MAplot rnaseq cummerbund
8.0 years ago kritikamish99 ▴ 10
0
votes
0
replies
913
views
cummeRbund cannot handle condition names starting with numerics
cummerbund
8.1 years ago kristoffer.vittingseerup ▴ 20
1
vote
7
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1.9k
views
Error installing cummeRbund/Rsamtools
cummerbund rsamtools package installation compilation error
8.1 years ago rainer.rutka ▴ 10
0
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1
reply
1.2k
views
cummeRbund sigMatrix wrong counts
cummeRbund
updated 7.6 years ago by • 0 • written 8.2 years ago by ▴ 30
0
votes
5
replies
2.9k
views
New Version of CummeRbund?
cummerbund rstudio
8.3 years ago lreiter • 0
1
vote
1
reply
5.1k
views
Error trying to install GenomicRanges
cummerbund rtracklayer genomicranges s4vectors iranges
updated 8.3 years ago by ★ 6.5k • written 8.3 years ago by • 0
3
votes
4
replies
2.0k
views
Large differences in sample clustering using cummeRbund (csDendro) and rlog-distance (DESeq2)
deseq2 cummerbund rlog fpkm clustering
8.3 years ago Jon Bråte ▴ 250
1
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2
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1.4k
views
Cannot re-create q-values from the p-values in the DiffTable.
cummeRbund pvalue adjusted pvalue qvalue
updated 8.3 years ago by 65k • written 8.3 years ago by ▴ 30
0
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0
replies
1.4k
views
Problems in building Cummerbundcuff Database
cummerbund readcufflinks geneset
8.3 years ago alessio.stevano • 0
0
votes
0
replies
1.5k
views
error while buliding database in readCufflinks in CummeRbund package
cummerbund readCufflinks
8.4 years ago Pinal • 0
0
votes
0
replies
1.1k
views
problem with CummeRbund when creating gene sets
cummerbund
8.4 years ago JunLVI ▴ 40
50 results • Page 1 of 1
Recent ...
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Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …
Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k
This comment helps.
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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