Showing : cummerbund • reset
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504
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cuffdiff-CummeRbund error
cummeRbund cufflink cuffdiff
updated 18 months ago by 67k • written 18 months ago by • 0
0
votes
1
reply
776
views
Check the CummeRbund PDF.
cummeRbund
updated 2.6 years ago by 4.1k • written 2.6 years ago by • 0
0
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0
replies
765
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Problems with library(cummeRbund)
cummeRbund
updated 4.8 years ago by 4.1k • written 4.8 years ago by • 0
0
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0
replies
875
views
Problems with cummeRbund
plot transcriptomics differential expression cummeRbund
4.8 years ago raquelponti • 0
0
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0
replies
794
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Error in readCufflinks
cummeRbund
5.8 years ago jerviedog • 0
0
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0
replies
997
views
0 values in cuff_data file from cummeRbund
cummeRbund cuff_data rnaseq cuffset
6.7 years ago alexandra.holden.2015 • 0
0
votes
1
reply
1.2k
views
Warning message RSQLite::Id in CummeRbund
bioconductor rnaseq cummerbund
updated 6.7 years ago by 67k • written 6.7 years ago by • 0
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0
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1.3k
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CuffSet instance with 0 samples
cummerbund sqlite readcufflinks
6.8 years ago eculfa • 0
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0
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1.1k
views
cummeRbund MA plot and csScatter error
cummerbund
6.9 years ago seyfim • 0
0
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0
replies
1.1k
views
problems with using cummeRbund
cummerbund
7.0 years ago sneha108ss • 0
3
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6
replies
2.1k
views
cummeRbund installation fails
bioconductor cummerbund software error GenomicFeatures
updated 7.1 years ago by 25k • written 7.1 years ago by ▴ 30
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0
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1.1k
views
Some modifications of cummeRbund to fit RSQLite 2.0
cummerbund
7.1 years ago C.K. Shiau • 0
0
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1
reply
1.4k
views
cummeRbund problem in creating database
cummerbund data run error
7.3 years ago majeedaasim • 0
0
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1
reply
1.8k
views
cummeRbund error: Column name mismatch.
cummeRbund
7.4 years ago sdhutchins • 0
1
vote
1
reply
1.4k
views
Installing old versions of cummeRbund
rna-seq cummerbund
updated 7.4 years ago by 67k • written 7.4 years ago by • 0
0
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4
replies
2.0k
views
Failure to load cufflinks data into cummeRbund
cummerbund
7.4 years ago rhart • 0
0
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0
replies
1.4k
views
Cummerbund differential expression data analysis package issue
rna-seq cummerbund
updated 7.5 years ago by 4.1k • written 7.5 years ago by • 0
2
votes
6
replies
3.8k
views
problem with cummeRbund using latest R version
cummeRbund
updated 7.3 years ago by • 0 • written 7.5 years ago by • 0
2
votes
1
reply
2.1k
views
Cummerbund error column name mismatch
cummerbund bug error
7.5 years ago tannerndrsn4 ▴ 20
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0
replies
1.1k
views
CummeRbund fail with example directory
cummerbund readcufflinks
7.5 years ago tommy.vo • 0
0
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0
replies
1.1k
views
CummeRbund returns 0 genes
cummeRbund rna seq anaylsis r cufdiff
7.5 years ago bhagyathimmappa • 0
11
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25
replies
11k
views
readCufflinks problem with extdata
cummerbund
updated 7.3 years ago by ▴ 10 • written 7.6 years ago by ▴ 40
0
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2
replies
1.6k
views
Color specific genes in cummeRbund scatterplot
cummerbund
updated 7.6 years ago by ▴ 110 • written 7.6 years ago by • 0
0
votes
3
replies
2.9k
views
error installing cummeRbund in R studio (Windows desktop)
Rstudio cummerbund error
7.6 years ago mszskb • 0
0
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0
replies
1.4k
views
CummeRbund volcano plot infinite values
cummerbund rnaseq
7.7 years ago niu.shengyong ▴ 10
0
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4
replies
2.2k
views
Errror cummeRbund installation
cummerbund annotationfilter
7.7 years ago esraesmeray1990 • 0
0
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0
replies
1.9k
views
use control_condition in heatmap with cummeRbund
cummerbund heatmap
7.8 years ago domenico.somma • 0
1
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2
replies
1.3k
views
How to transform edgeR output into a cummeRbund object?
edgeR cummeRbund
7.8 years ago alakatos ▴ 130
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0
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1.7k
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cummeRbund heatmap for specific isoforms (not genes)
cummerbund heatmap isoforms transcript_id
7.8 years ago domenico.somma • 0
0
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2
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1.3k
views
Problem with cummeRbund
rstudio cummerbund
7.9 years ago • updated 7.8 years ago sanathoi.guru • 0
0
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0
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1.1k
views
cummeRbund error dealing with cuffdiff results
rnaseq cummerbund R software error
7.9 years ago wastdc • 0
4
votes
4
replies
1.8k
views
How to isolate gene from a single chromosome, RNA Seq experiment, using R package ?
rnaseq r cummerbund
updated 8.1 years ago by 52k • written 8.1 years ago by • 0
0
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0
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1.2k
views
Error in CummeRbund when using myGenes<-getGenes(cuff,myGeneIds)
cummerbund
8.4 years ago juafonso_bio • 0
0
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1
reply
1.7k
views
csHeatmap - how to adjust order and number of genes displayed or change the size of the plot
cummerbund
updated 8.5 years ago by ▴ 420 • written 8.5 years ago by • 0
0
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0
replies
1.1k
views
CummeRbund Expression Bar Plot
cummerbund rnaseq
8.5 years ago k1064622 • 0
3
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4
replies
1.8k
views
Cannot install CummeRbund on R v.3.3.0
cummeRbund RNA-Seq
8.6 years ago eihpos76mm • 0
1
vote
1
reply
1.6k
views
Cannot install CummeRbund on R version 3.0.2 (2013-09-25)
cummerbund
updated 8.6 years ago by 25k • written 8.6 years ago by • 0
1
vote
3
replies
2.0k
views
spliceR error with GTF cummeRbund input
splicer cummerbund
updated 7.6 years ago by • 0 • written 8.6 years ago by ▴ 10
0
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0
replies
1.1k
views
cummeRbund - package( fpkmSCVPlot)
cummerbund fpkmsvplot
8.6 years ago yunlongjia • 0
0
votes
0
replies
1.4k
views
error while running MAplot
MAplot rnaseq cummerbund
8.8 years ago kritikamish99 ▴ 10
0
votes
0
replies
1.1k
views
cummeRbund cannot handle condition names starting with numerics
cummerbund
8.8 years ago kristoffer.vittingseerup ▴ 20
1
vote
7
replies
2.3k
views
Error installing cummeRbund/Rsamtools
cummerbund rsamtools package installation compilation error
8.9 years ago rainer.rutka ▴ 10
0
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1
reply
1.4k
views
cummeRbund sigMatrix wrong counts
cummeRbund
updated 8.3 years ago by • 0 • written 9.0 years ago by ▴ 30
0
votes
5
replies
3.2k
views
New Version of CummeRbund?
cummerbund rstudio
9.0 years ago lreiter • 0
1
vote
1
reply
5.6k
views
Error trying to install GenomicRanges
cummerbund rtracklayer genomicranges s4vectors iranges
updated 9.0 years ago by ★ 6.6k • written 9.0 years ago by • 0
3
votes
4
replies
2.3k
views
Large differences in sample clustering using cummeRbund (csDendro) and rlog-distance (DESeq2)
deseq2 cummerbund rlog fpkm clustering
9.0 years ago Jon Bråte ▴ 260
1
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2
replies
1.7k
views
Cannot re-create q-values from the p-values in the DiffTable.
cummeRbund pvalue adjusted pvalue qvalue
updated 9.0 years ago by 67k • written 9.0 years ago by ▴ 30
0
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0
replies
1.6k
views
Problems in building Cummerbundcuff Database
cummerbund readcufflinks geneset
9.1 years ago alessio.stevano • 0
0
votes
0
replies
1.7k
views
error while buliding database in readCufflinks in CummeRbund package
cummerbund readCufflinks
9.1 years ago Pinal • 0
0
votes
0
replies
1.2k
views
problem with CummeRbund when creating gene sets
cummerbund
9.1 years ago JunLVI ▴ 40
50 results • Page 1 of 1
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Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…
Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k
Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…
Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0
Thank you so much ! It's working !
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k
Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…
Comment: Recount3 data correspond to TCGA data by Leonardo Collado Torres ★ 1.1k
Thanks @fep29! ^^
Votes
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
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