Bioconductor CuratedMetagenomicData

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Metagenomics curatedMetagenomicData bugsigdbr

written 3 months ago by Levi Waldron ★ 1.1k

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curatedMetagenomicData

updated 7 months ago by Levi Waldron ★ 1.1k • written 7 months ago by levlitichev • 0

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curatedMetagenomicData

10 months ago Vitor Heidrich • 0

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curatedMetagenomicData

updated 13 months ago by Lucas Schiffer ▴ 240 • written 13 months ago by Sehyun Oh ▴ 10

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curatedMetagenomicData

updated 13 months ago by Lucas Schiffer ▴ 240 • written 14 months ago by yingliu3 • 0

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MicrobiomeData curatedMetagenomicData

16 months ago Pauline ▴ 20

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curatedMetagenomicData

updated 17 months ago by Lucas Schiffer ▴ 240 • written 17 months ago by pd378 • 0

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curatedMetagenomicData

updated 21 months ago by Lucas Schiffer ▴ 240 • written 21 months ago by zachary.flamholz • 0

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curatedMetagenomicData

updated 24 months ago by Lucas Schiffer ▴ 240 • written 2.0 years ago by ajgasparrini • 0

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curatedMetagenomicData TreeSummarizedExperiment

2.7 years ago Davide • 0

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curatedmetagenomicdata

updated 5.6 years ago by Levi Waldron ★ 1.1k • written 5.6 years ago by grp2009 • 0

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software error curatedmetagenomicdata annotationhub experimenthub

updated 7.3 years ago by Levi Waldron ★ 1.1k • written 7.3 years ago by morganx ▴ 10

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biocparallel curatedmetagenomicdata parallel dplyr

updated 7.4 years ago by Martin Morgan 25k • written 7.4 years ago by Lucas Schiffer ▴ 240

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ExperimentHub curatedMetagenomicData

updated 7.4 years ago by Lucas Schiffer ▴ 240 • written 7.5 years ago by Wolfgang Huber ★ 13k

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Answer: DESEQ2 output gives multiple groups when only 2 groups are present by ATpoint ★ 4.0k

In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …

Answer: A ComBat-seq issue: the covariates are confounded by ATpoint ★ 4.0k

```r > table(batch, group) group batch egfr gfp her2 1 0 12 5 2 6 6 0 ``` All of her2 is batch2, all of egfr i…

Comment: DESeq2 setting significant p-value by Dev • 0

after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…

Comment: Reading huge bismark coverage files using bbseq::read.bismark by jacques.imbert • 0

Hello, Using nThread = 1L fixed the issue. Thank you for your time and help.

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Comment: Reading huge bismark coverage files using bbseq::read.bismark

Answer: Reading huge bismark coverage files using bbseq::read.bismark

Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

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