Bioconductor CuratedMetagenomicData

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Metagenomics curatedMetagenomicData bugsigdbr

written 3 months ago by Levi Waldron ★ 1.1k

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curatedMetagenomicData

updated 7 months ago by Levi Waldron ★ 1.1k • written 7 months ago by levlitichev • 0

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curatedMetagenomicData

10 months ago Vitor Heidrich • 0

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curatedMetagenomicData

updated 13 months ago by Lucas Schiffer ▴ 240 • written 13 months ago by Sehyun Oh ▴ 10

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curatedMetagenomicData

updated 13 months ago by Lucas Schiffer ▴ 240 • written 14 months ago by yingliu3 • 0

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MicrobiomeData curatedMetagenomicData

16 months ago Pauline ▴ 20

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curatedMetagenomicData

updated 17 months ago by Lucas Schiffer ▴ 240 • written 17 months ago by pd378 • 0

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curatedMetagenomicData

updated 21 months ago by Lucas Schiffer ▴ 240 • written 21 months ago by zachary.flamholz • 0

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curatedMetagenomicData

updated 24 months ago by Lucas Schiffer ▴ 240 • written 2.0 years ago by ajgasparrini • 0

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curatedMetagenomicData TreeSummarizedExperiment

2.7 years ago Davide • 0

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curatedmetagenomicdata

updated 5.6 years ago by Levi Waldron ★ 1.1k • written 5.6 years ago by grp2009 • 0

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software error curatedmetagenomicdata annotationhub experimenthub

updated 7.3 years ago by Levi Waldron ★ 1.1k • written 7.3 years ago by morganx ▴ 10

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biocparallel curatedmetagenomicdata parallel dplyr

updated 7.4 years ago by Martin Morgan 25k • written 7.4 years ago by Lucas Schiffer ▴ 240

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ExperimentHub curatedMetagenomicData

updated 7.4 years ago by Lucas Schiffer ▴ 240 • written 7.5 years ago by Wolfgang Huber ★ 13k

14 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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