Bioconductor Curatedmetagenomicdata

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software error curatedmetagenomicdata annotationhub experimenthub

updated 7.3 years ago by Levi Waldron ★ 1.1k • written 7.4 years ago by morganx ▴ 10

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curatedmetagenomicdata

updated 5.6 years ago by Levi Waldron ★ 1.1k • written 5.6 years ago by grp2009 • 0

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ExperimentHub curatedMetagenomicData

updated 7.4 years ago by Lucas Schiffer ▴ 240 • written 7.5 years ago by Wolfgang Huber ★ 13k

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biocparallel curatedmetagenomicdata parallel dplyr

updated 7.4 years ago by Martin Morgan 25k • written 7.4 years ago by Lucas Schiffer ▴ 240

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curatedMetagenomicData TreeSummarizedExperiment

2.7 years ago Davide • 0

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curatedMetagenomicData

updated 24 months ago by Lucas Schiffer ▴ 240 • written 2.0 years ago by ajgasparrini • 0

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MicrobiomeData curatedMetagenomicData

16 months ago Pauline ▴ 20

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curatedMetagenomicData

updated 17 months ago by Lucas Schiffer ▴ 240 • written 17 months ago by pd378 • 0

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curatedMetagenomicData

updated 21 months ago by Lucas Schiffer ▴ 240 • written 21 months ago by zachary.flamholz • 0

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Metagenomics curatedMetagenomicData bugsigdbr

written 4 months ago by Levi Waldron ★ 1.1k

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curatedMetagenomicData

updated 14 months ago by Lucas Schiffer ▴ 240 • written 14 months ago by yingliu3 • 0

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curatedMetagenomicData

updated 7 months ago by Levi Waldron ★ 1.1k • written 7 months ago by levlitichev • 0

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curatedMetagenomicData

updated 13 months ago by Lucas Schiffer ▴ 240 • written 13 months ago by Sehyun Oh ▴ 10

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curatedMetagenomicData

11 months ago Vitor Heidrich • 0

14 results • Page 1 of 1

Recent ...

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Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by James W. MacDonald 65k

You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…

Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Votes

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0