Bioconductor Curatedmetagenomicdata

Showing : curatedmetagenomicdata • reset

votes

replies

2.5k

views

software error curatedmetagenomicdata annotationhub experimenthub

updated 7.3 years ago by Levi Waldron ★ 1.1k • written 7.3 years ago by morganx ▴ 10

votes

replies

1.4k

views

ExperimentHub curatedMetagenomicData

updated 7.4 years ago by Lucas Schiffer ▴ 240 • written 7.5 years ago by Wolfgang Huber ★ 13k

votes

replies

876

views

curatedMetagenomicData

updated 24 months ago by Lucas Schiffer ▴ 240 • written 2.0 years ago by ajgasparrini • 0

votes

replies

965

views

curatedMetagenomicData TreeSummarizedExperiment

2.7 years ago Davide • 0

votes

1.3k

views

biocparallel curatedmetagenomicdata parallel dplyr

updated 7.4 years ago by Martin Morgan 25k • written 7.4 years ago by Lucas Schiffer ▴ 240

votes

replies

589

views

curatedMetagenomicData

updated 17 months ago by Lucas Schiffer ▴ 240 • written 17 months ago by pd378 • 0

votes

replies

639

views

MicrobiomeData curatedMetagenomicData

16 months ago Pauline ▴ 20

votes

443

views

curatedMetagenomicData

updated 13 months ago by Lucas Schiffer ▴ 240 • written 14 months ago by yingliu3 • 0

votes

516

views

curatedMetagenomicData

updated 21 months ago by Lucas Schiffer ▴ 240 • written 21 months ago by zachary.flamholz • 0

vote

399

views

curatedMetagenomicData

updated 7 months ago by Levi Waldron ★ 1.1k • written 7 months ago by levlitichev • 0

vote

replies

2.3k

views

curatedmetagenomicdata

updated 5.6 years ago by Levi Waldron ★ 1.1k • written 5.6 years ago by grp2009 • 0

votes

399

views

curatedMetagenomicData

updated 13 months ago by Lucas Schiffer ▴ 240 • written 13 months ago by Sehyun Oh ▴ 10

votes

replies

281

views

curatedMetagenomicData

10 months ago Vitor Heidrich • 0

votes

replies

500

views

Metagenomics curatedMetagenomicData bugsigdbr

written 4 months ago by Levi Waldron ★ 1.1k

14 results • Page 1 of 1

Recent ...

Replies

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

Votes

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Awards • All

Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k