Bioconductor CustomCDF

Showing : customCDF • reset

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customcdf affymetrix microarrays hgu133plus2 affy

6.3 years ago rahil ▴ 30

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oligo pdinfobuilder pd.mogene.1.1.st customcdf

updated 7.6 years ago by James W. MacDonald 65k • written 8.1 years ago by Guido Hooiveld ★ 3.9k

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oligo customcdf HTA frma

updated 8.6 years ago by James W. MacDonald 65k • written 8.6 years ago by sanj ▴ 20

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justrma customCDF segfault

updated 5.3 years ago by Daniel ▴ 10 • written 8.5 years ago by maria.lehtivaara • 0

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affy oligo customcdf

9.4 years ago • updated 9.1 years ago rishi.dasroy ▴ 20

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hta customcdf

updated 7.2 years ago by James W. MacDonald 65k • written 7.2 years ago by pbachali ▴ 50

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oligo brainarray rma customcdf

updated 7.2 years ago by James W. MacDonald 65k • written 7.2 years ago by lcordeiro • 0

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Annotation GO CustomCDF cdf gcrma Annotation GO CustomCDF cdf gcrma

updated 14.4 years ago by James W. MacDonald 65k • written 14.4 years ago by Yair Benita ▴ 80

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microarray oligo cdf customcdf

updated 8.4 years ago by Guido Hooiveld ★ 3.9k • written 8.4 years ago by Nathaniel ▴ 20

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837

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customcdf

updated 7.3 years ago by James W. MacDonald 65k • written 7.3 years ago by 12021560-002 • 0

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943

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customcdf R microarray

updated 7.3 years ago by James W. MacDonald 65k • written 7.3 years ago by 12021560-002 • 0

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875

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gcrma CustomCDF Affyhgu133aExpr limma affy

updated 12 months ago by James W. MacDonald 65k • written 12 months ago by Pratik Mehta ▴ 10

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1.9k

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sva ComBat customcdf affymetrix microarrays limma

8.2 years ago svlachavas ▴ 830

13 results • Page 1 of 1

Recent ...

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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by James W. MacDonald 65k

You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…

Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0