Bioconductor CustomCDF

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affy oligo customcdf

9.4 years ago • updated 9.1 years ago rishi.dasroy ▴ 20

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hta customcdf

updated 7.2 years ago by James W. MacDonald 65k • written 7.2 years ago by pbachali ▴ 50

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oligo pdinfobuilder pd.mogene.1.1.st customcdf

updated 7.6 years ago by James W. MacDonald 65k • written 8.1 years ago by Guido Hooiveld ★ 3.9k

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oligo customcdf HTA frma

updated 8.6 years ago by James W. MacDonald 65k • written 8.6 years ago by sanj ▴ 20

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microarray oligo cdf customcdf

updated 8.4 years ago by Guido Hooiveld ★ 3.9k • written 8.4 years ago by Nathaniel ▴ 20

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customcdf affymetrix microarrays hgu133plus2 affy

6.3 years ago rahil ▴ 30

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justrma customCDF segfault

updated 5.2 years ago by Daniel ▴ 10 • written 8.5 years ago by maria.lehtivaara • 0

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874

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gcrma CustomCDF Affyhgu133aExpr limma affy

updated 12 months ago by James W. MacDonald 65k • written 12 months ago by Pratik Mehta ▴ 10

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customcdf R microarray

updated 7.3 years ago by James W. MacDonald 65k • written 7.3 years ago by 12021560-002 • 0

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Annotation GO CustomCDF cdf gcrma Annotation GO CustomCDF cdf gcrma

updated 14.4 years ago by James W. MacDonald 65k • written 14.4 years ago by Yair Benita ▴ 80

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oligo brainarray rma customcdf

updated 7.2 years ago by James W. MacDonald 65k • written 7.2 years ago by lcordeiro • 0

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customcdf

updated 7.3 years ago by James W. MacDonald 65k • written 7.3 years ago by 12021560-002 • 0

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sva ComBat customcdf affymetrix microarrays limma

8.2 years ago svlachavas ▴ 830

13 results • Page 1 of 1

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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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