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Recent ...
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Comment: How to combine two DESeq2 objects (dds) for analysis
by
TzuChiao
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Hello Luke,
Since DESeq2 takes raw counts, and provided that you only have the DESeq objects, you can extract raw counts with
```r
count_…
Comment: deseq2 normalized counts as an input to deseq2
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Hi Michael,
I have a similar question regarding the normalization of my RNAseq data.
I used VSN normalization on pre-filtered data as f…
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Thx,
actually I have started reading it and think at some point I'll get it. However,
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Comment: pathview: Warning: Failed to download KEGG xml/png files, hsa04110 skipped!
by
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Really appreciate your help :)
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Comment: how can I do gene differential analysis on data after vst
by
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I advised you to use limma-trend, which you can look up in the limma User's Guide. You simply analyse the vst values as if they were from a…
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