Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
customprodb
•
reset
0
votes
1
reply
697
views
customProDB easyrun error in generating a custom protein database: Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse")
customProDB
19 months ago
Esraa
• 0
0
votes
1
reply
697
views
Calculate RPKMs and Output proteins pass the cutoff into FASTA file ... Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse") : i…
customProDB
easyrun
error
mm10
Mus_musculus_Data
updated 20 months ago by
James W. MacDonald
67k • written 20 months ago by
Esraa
• 0
0
votes
0
replies
430
views
customProDB: error aberrant fasta from SNV
customProDB
24 months ago
finoa.li
• 0
0
votes
0
replies
634
views
CustomProDB: specify a snp dataset to be used for the SNP annotation
customProDB
2.5 years ago
04.marshal-decibel
• 0
0
votes
0
replies
1.0k
views
How to get the chrominfo from ENSEMBL? (biomaRt and customProDB)
biomaRt
customProDB
2.6 years ago
04.marshal-decibel
• 0
0
votes
1
reply
933
views
customProDB: function PrepareAnnotationEnsembl() not working (biomart issue?)
customProDB
Ensembl connection
biomart
5.2 years ago
laura.fancello
• 0
0
votes
1
reply
1.0k
views
CustomProDB InputVcf() - Issue getting the GRanges INDEL object from VCF file
vcf
snv
gatk
customprodb
inputvcf
5.5 years ago
Elena.M
• 0
4
votes
9
replies
3.8k
views
Create protein sequences including variants from a VCF file
VariantAnnotation
customProDB
updated 8 months ago by
Yun
• 0 • written 5.9 years ago by
daniel.magnus.bader
▴ 50
0
votes
1
reply
1.1k
views
customProDB: "complex" SNV scenarios handling
customprodb
updated 6.4 years ago by
xiaojing.wang
▴ 50 • written 6.4 years ago by
iranmdl15
• 0
0
votes
1
reply
1.2k
views
Error with PrepareAnnotationRefseq: "tablenametotrack2: UCSC table "refGene" is not supported"
customProDB
updated 6.5 years ago by
xiaojing.wang
▴ 50 • written 6.6 years ago by
samupatt
• 0
0
votes
1
reply
1.1k
views
aaVariation function bug (Methonine instead of Leucine)
customprodb
translation
updated 6.5 years ago by
xiaojing.wang
▴ 50 • written 6.8 years ago by
georges.bedran
• 0
0
votes
3
replies
1.9k
views
calculateRPKM error in customProDB
software error
customprodb
updated 3.1 years ago by
Anne
• 0 • written 7.5 years ago by
javamng
▴ 10
0
votes
0
replies
1.1k
views
Annotation package generation error for customprodb for hg38
customprodb
7.0 years ago
arunima2
• 0
1
vote
1
reply
1.6k
views
error with calculateRPKM in customProDB
customProDB
software error
updated 3.1 years ago by
Anne
• 0 • written 7.5 years ago by
javamng
▴ 10
0
votes
1
reply
1.2k
views
customProDB, OutputVarproseq function update (snvproseq)
customprodb
updated 8.1 years ago by
xiaojing.wang
▴ 50 • written 8.1 years ago by
georges.bedran
• 0
0
votes
0
replies
1.3k
views
PrepareAnnotationRefseq2 function error!
PGA
customprodb
8.5 years ago
yeh234
• 0
0
votes
1
reply
1.3k
views
CustomproDB JunctionType function
customprodb
updated 8.6 years ago by
xiaojing.wang
▴ 50 • written 8.6 years ago by
georges.bedran
• 0
0
votes
1
reply
1.3k
views
Pull request for customProDB package
customProDB
featurerequest
updated 8.7 years ago by
Dan Tenenbaum
★ 8.2k • written 8.7 years ago by
matt.chambers42
▴ 10
2
votes
4
replies
2.1k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 9.6 years ago by
xiaojing.wang
▴ 50 • written 9.6 years ago by
kristenbeck527
• 0
2
votes
2
replies
1.9k
views
customProDB: issues getting dbSNP data for human (hg19)
customprodb
dbsnp
refseq
varianttools
updated 9.6 years ago by
xiaojing.wang
▴ 50 • written 9.6 years ago by
kristenbeck527
• 0
2
votes
4
replies
1.9k
views
customProDB: issues getting dbSNP data for non-model organism
ensembl
macaque
dbsnp
customprodb
updated 9.6 years ago by
xiaojing.wang
▴ 50 • written 9.6 years ago by
kristenbeck527
• 0
21 results • Page
1 of 1
Recent ...
Replies
Answer: Postdoc/RA position: Software Engineer For R and High-Performance Computing
by
delhirussianescortscom
• 0
Our escorts are well-groomed and well-trained to give you ultimate seduction and deep pleasure. If you're looking for hot Delhi air hostess…
Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Robert Castelo
★ 3.4k
Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…
Answer: Selection of correct coefficients or contrasts in DESeq2
by
James W. MacDonald
67k
Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…
Comment: How to generate circular cnetplot and color nodes and edges in the same plot ?
by
Blandine
• 0
Thank you so much ! It's working !
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
James W. MacDonald
67k
Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…
Votes
A: DESeq2 interaction term
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Awards
• All
Popular Question
to
ajglajd gajgflkadfj gl
• 0
Popular Question
to
Robert Castelo
★ 3.4k
Popular Question
to
Robert Ivanek
▴ 750
Popular Question
to
shepherl
4.1k
Popular Question
to
Martin Morgan
25k
Locations
• All
Barcelona/Universitat Pompeu Fabra,
53 minutes ago
India,
1 hour ago
United States,
3 hours ago
WEHI, Melbourne, Australia,
4 hours ago
The city by the bay,
5 hours ago
Traffic: 454 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6