Showing : cycle • reset
0
votes
8
replies
1.7k
views
Filtering BAM files by start position for VariantTools
Coverage Cancer cycle VariantTools Coverage Cancer cycle VariantTools
updated 10.7 years ago by ▴ 250 • written 10.7 years ago by 25k
0
votes
4
replies
1.4k
views
Anyone have a GO slim list for Affy HG-U133A or HG-U133Av2?
Annotation GO annotate affy PROcess Category cycle Annotation GO annotate affy PROcess
updated 19.2 years ago by ▴ 310 • written 19.2 years ago by ▴ 250
0
votes
4
replies
1.5k
views
Reading in data with HTqPCR
qPCR Cancer cycle HTqPCR qPCR Cancer cycle HTqPCR
13.9 years ago Heidi Dvinge ★ 2.0k
0
votes
4
replies
1.3k
views
Accessing old versions of bioc packages
cycle cycle
updated 11.0 years ago by ★ 8.2k • written 11.0 years ago by ★ 1.3k
0
votes
3
replies
1.4k
views
paired sample LIMMA
limma cycle limma cycle
updated 12.9 years ago by ▴ 170 • written 12.9 years ago by ▴ 230
0
votes
3
replies
1.8k
views
pathway ID in KEGG.db
Pathways cycle Pathways cycle
updated 11.8 years ago by ★ 7.2k • written 11.8 years ago by ▴ 230
0
votes
3
replies
2.4k
views
Reading in data with HTqPCR
Cancer cycle Cancer cycle
updated 13.9 years ago by ▴ 40 • written 13.9 years ago by ★ 2.0k
0
votes
3
replies
1.0k
views
ShortRead Per Cycle Score
GO cycle GO cycle
updated 14.0 years ago by 25k • written 14.0 years ago by ★ 1.5k
0
votes
3
replies
1.9k
views
runSPIA() in graphite package
Pathways Breast siggenes PROcess cycle graphite Pathways Breast siggenes PROcess cycle
updated 11.2 years ago by ▴ 20 • written 11.2 years ago by ▴ 420
0
votes
3
replies
1.8k
views
ReportingTools and gene annotation
Annotation GO cycle ReportingTools DESeq2 Annotation GO cycle ReportingTools DESeq2
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 340
0
votes
2
replies
1.2k
views
how to combine microarray data and phenotype data into a least squares analysis?
Microarray cycle Microarray cycle
updated 15.6 years ago by 65k • written 15.6 years ago by ▴ 40
0
votes
2
replies
1.2k
views
affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray cdf affy makecdfenv PROcess oligo cycle Microarray cdf affy makecdfenv oligo
updated 12.2 years ago by 65k • written 12.2 years ago by ▴ 630
0
votes
2
replies
1.2k
views
reviews for quality control
cycle cycle
updated 11.7 years ago by ★ 1.3k • written 11.7 years ago by ▴ 680
0
votes
2
replies
822
views
about plot rglist
Microarray Cancer limma cycle Microarray Cancer limma cycle
updated 17.6 years ago by ★ 2.2k • written 17.6 years ago by 65k
0
votes
2
replies
1.2k
views
Finding coding SNPs with predictCoding
SNP Annotation BSgenome ctc BSgenome cycle genomes SNP Annotation BSgenome ctc BSgenome
updated 12.1 years ago by ★ 1.7k • written 12.1 years ago by ★ 6.8k
0
votes
2
replies
993
views
some basic questions
Microarray Annotation Normalization cdf probe cycle Microarray Annotation Normalization
updated 12.4 years ago by ★ 2.0k • written 12.4 years ago by ▴ 40
0
votes
2
replies
929
views
some basic questions
Microarray Normalization cdf cycle Microarray Normalization cdf cycle
updated 12.4 years ago by 21k • written 12.4 years ago by ★ 13k
0
votes
1
reply
956
views
affy 1 cycle vs 2 cycle labeling kit
cycle cycle
updated 19.9 years ago by ▴ 130 • written 19.9 years ago by ▴ 140
0
votes
1
reply
1.3k
views
Request for the assistance to use MEDME
Microarray Normalization Organism probe limma MEDME cycle ASSIGN Microarray Normalization
updated 15.3 years ago by ▴ 30 • written 15.3 years ago by ▴ 90
0
votes
1
reply
1.0k
views
Cho et al.'s Expression Dataset in Yeast
Yeast cycle Yeast cycle
updated 19.0 years ago by ▴ 60 • written 19.0 years ago by ▴ 20
0
votes
1
reply
1.1k
views
FW: Request for the assistance to use MEDME
Normalization Organism probe MEDME cycle ASSIGN Normalization Organism probe MEDME cycle
updated 15.4 years ago by ▴ 30 • written 15.4 years ago by ▴ 90
0
votes
1
reply
629
views
ShortRead QA Feature
graph cycle graph cycle
updated 14.0 years ago by 25k • written 14.0 years ago by ★ 1.5k
0
votes
1
reply
1.0k
views
sir
Cancer cycle HTqPCR Cancer cycle HTqPCR
updated 13.9 years ago by ▴ 40 • written 13.9 years ago by ★ 2.0k
0
votes
1
reply
1.4k
views
TLDA data
Clustering Cancer PROcess cycle HTqPCR Clustering Cancer PROcess cycle HTqPCR
updated 13.9 years ago by ★ 2.0k • written 13.9 years ago by ▴ 40
0
votes
1
reply
1.3k
views
CRAN packages maintained by you
hexbin gpls RBGL impute Icens hopach maanova RLMM CORREP cycle hexbin gpls RBGL Icens
updated 12.5 years ago by ▴ 430 • written 12.5 years ago by ▴ 10
0
votes
1
reply
1.9k
views
FW: URGENT Help required: Getting this error with GAGE analysis, input files attached
Microarray Annotation Pathways GO Cancer Breast cycle gage Microarray Annotation GO
updated 12.2 years ago by ▴ 200 • written 12.2 years ago by 25k
0
votes
1
reply
914
views
Finding coding SNPs with predictCoding
SNP Annotation BSgenome BSgenome GenomicFeatures cycle genomes SNP Annotation BSgenome
updated 11.9 years ago by ★ 1.7k • written 11.9 years ago by ★ 6.8k
0
votes
1
reply
1.1k
views
how does ShortRead function identify score system
cycle cycle
updated 11.6 years ago by 25k • written 11.6 years ago by ★ 2.0k
0
votes
1
reply
2.5k
views
SPIA error - Error in density.default(pfstmp, bw = sd(pfstmp)/4) : \'bw\' is not positive.
SPIA cycle SPIA cycle
updated 10.4 years ago by ▴ 570 • written 10.4 years ago by ★ 13k
0
votes
1
reply
1.7k
views
pathway analysis by SPIA using SPIA package vs graphite package
Pathways SPIA cycle graphite Pathways SPIA cycle graphite
10.3 years ago array chip ▴ 420
0
votes
0
replies
810
views
Release 1.1
cycle cycle
21.5 years ago Jeff Gentry ★ 3.9k
0
votes
0
replies
1.6k
views
qPCR event preview - April 2010
miRNA qPCR Normalization probe microRNA cycle miRNA qPCR Normalization probe microRNA
14.0 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
0
replies
878
views
major alterations to GGdata/GGtools planned
SNP snpMatrix cycle SNP snpMatrix cycle
16.1 years ago Vincent J. Carey, Jr. 6.7k
0
votes
0
replies
758
views
New release of triplex package
cycle cycle
10.5 years ago Jiří Hon ▴ 20
0
votes
0
replies
966
views
Differentially Expressed Genes in Time Series with Replications
Yeast cycle Yeast cycle
17.3 years ago peter robinson ▴ 300
0
votes
0
replies
3.1k
views
DESeq2 with GAGE
Pathways cycle gage DESeq2 pathview Pathways cycle gage DESeq2 pathview
10.4 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.6k
views
Cell cycle analysis of FACS data
rflowcyt cycle rflowcyt cycle
17.8 years ago Ulrik Stervbo ▴ 80
0
votes
0
replies
740
views
LIMMA
limma cycle limma cycle
18.2 years ago Gordon Smyth 50k
0
votes
0
replies
884
views
RMA verse GCRMA, low intensity
cycle cycle
19.1 years ago Matthew Hannah ▴ 940
0
votes
0
replies
1.3k
views
JOB: Microarray Bioinformatics Specialist
Microarray Cancer CGH cycle Microarray Cancer CGH cycle
16.2 years ago Robert Castelo ★ 3.3k
0
votes
0
replies
857
views
Using different file formats with oligo and analysis packages using oligo
SNP Microarray qPCR cycle SNP Microarray qPCR cycle
11.3 years ago Hans Thompson ▴ 30
0
votes
0
replies
1.3k
views
structure of cfx file for HTqPCR
Microarray qPCR cycle HTqPCR Microarray qPCR cycle HTqPCR
11.2 years ago Guest User ★ 13k
0
votes
0
replies
815
views
Re: webbioc and multtest
webbioc cycle webbioc cycle
20.4 years ago Colin A. Smith ▴ 220
0
votes
0
replies
977
views
Biostrings
GO Cancer Biostrings cycle GO Cancer Biostrings cycle
11.2 years ago Hervé Pagès 16k
0
votes
0
replies
1.7k
views
getGEO problem
aCGH gpls aCGH GEOquery cycle aCGH gpls aCGH GEOquery cycle
14.2 years ago Sean Davis 21k
0
votes
0
replies
1.0k
views
Subsetting vcf file by subject
VariantAnnotation Annotation cycle VariantAnnotation VariantAnnotation Annotation cycle
11.0 years ago Valerie Obenchain ★ 6.8k
0
votes
0
replies
1.9k
views
How to do GO enrichment analysis with GOstats while the gene set with no p values of gene difference expression
Transcription PROcess GOstats cycle Transcription PROcess GOstats cycle
13.7 years ago zhidong yuan ▴ 10
0
votes
0
replies
983
views
replicable of *PLGEM*
plgem cycle plgem cycle
13.5 years ago Pavelka, Norman ▴ 70
0
votes
0
replies
1.2k
views
how to combine microarray data and phenotype data into a least squares analysis?
Microarray cycle Microarray cycle
15.6 years ago Amy Mikhail ▴ 460
0
votes
0
replies
852
views
Fwd: Unable to install packages
Microarray Annotation cdf probe cycle Microarray Annotation cdf probe cycle
12.8 years ago James W. MacDonald 65k
50 results • Page 1 of 1
Recent ...
Replies
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
That did NOT really improve things...... Likely I wasn't clear enough, but with R-code I meant both the command you typed, as well as the o…
Comment: Trying to use enrichGO by fernanda.backsouza • 0
Thank you for yout time guido, 1) When the pvalueCutoff = 1 nothing change. 2) output from `str(ortologos_filtrados)` data.frame': 14 obs…
Answer: Cannabis OrgDb by Guido Hooiveld ★ 3.9k
> library(AnnotationHub) > hub <- AnnotationHub() snapshotDate(): 2023-10-23 > query(hub, c("cannabis","orgdb") ) …
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
To increase readability: could you please reformat your post? Select the R--code, and click the `CODE` button... the 5th button.
Comment: Trying to use enrichGO by fernanda.backsouza • 0
Thank you for yout time guido, 1) When the pvalueCutoff = 1 nothing change. 2) output from str(ortologos_filtrados) data.frame': 14 obs. …
Votes
Answer: Cannabis OrgDb
DESeq2: How to find out how well the model fits the data?
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
Answer: OrgDb for maize
Awards • All
Scholar to Michael Love 41k
Popular Question to shepherl 3.8k
Scholar to Gordon Smyth 50k
Popular Question to taur.vil • 0
Teacher to Yuan Tian ▴ 280
Locations • All
Brazil, 1 minute ago
United States, 2 minutes ago
Wageningen University, Wageningen, the Netherlands, 3 minutes ago
France, 18 minutes ago
EMBL Heidelberg, 21 minutes ago
Traffic: 892 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6