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cydar
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Comparison of cydar to other Bioconductor packages for flow cytometry analysis
cydar
updated 4.0 years ago by
Aaron Lun
★ 28k • written 4.0 years ago by
thkapell
▴ 10
1
vote
6
replies
1.5k
views
Re: Cydar. Can I Normalize CyTOF data with just one FCS file/batch and if so, which normalization mode is recommended?
Cydar
CyTOF
normalization
updated 4.5 years ago by
Aaron Lun
★ 28k • written 4.5 years ago by
ghogg
• 0
0
votes
4
replies
1.1k
views
Using output from normalizeBatch() outside of cydar package
cydar
mass cytometry
updated 4.8 years ago by
Aaron Lun
★ 28k • written 4.8 years ago by
kenneth.baker
• 0
2
votes
8
replies
1.5k
views
Cydar normalizeBatch specifying batches
Cydar
normalization
normalizeBatch
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
Florent
▴ 10
2
votes
4
replies
886
views
Cydar's countCells tolerance parameter for arcsinh-transformed data
cydar
CyTOF
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
mikhael.manurung
▴ 270
1
vote
2
replies
788
views
cydar: negative values for cell assignment indices
cydar
6.7 years ago
Lukas Weber
• 0
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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