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cytof
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flow cytometry differential expression through time
cytofWorkflow
cytof
diffcyt
3.3 years ago
achaillon
• 0
0
votes
0
replies
1.3k
views
Error from FlowSom to Cytofast
Cytofast
FlowSom
CyTOF
fcs files
3.5 years ago
domenico.somma
• 0
1
vote
5
replies
1.0k
views
CyTOF Differential Abundance Analysis using DESeq2
deseq2
mass cytometry
CyTOF
updated 3.5 years ago by
Michael Love
41k • written 3.5 years ago by
mikhael.manurung
▴ 270
0
votes
0
replies
604
views
Concatenating different runs from the same pool of barcoded CyTOF samples
batch effect
cytof
4.0 years ago
mikhael.manurung
▴ 270
1
vote
6
replies
1.5k
views
Re: Cydar. Can I Normalize CyTOF data with just one FCS file/batch and if so, which normalization mode is recommended?
Cydar
CyTOF
normalization
updated 4.5 years ago by
Aaron Lun
★ 28k • written 4.5 years ago by
ghogg
• 0
2
votes
4
replies
884
views
Cydar's countCells tolerance parameter for arcsinh-transformed data
cydar
CyTOF
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
mikhael.manurung
▴ 270
2
votes
2
replies
1.3k
views
Cytofkit - Trouble with writing files after performing the analysis
cytofkit
cytof
write.csv
output
updated 7.4 years ago by
chen_hao
▴ 30 • written 7.4 years ago by
cjackson13
• 0
1
vote
2
replies
2.7k
views
Errors when reading CyToF flowSet into flowCore
flowCore
flowcore
CyToF
Rtsne
updated 8.6 years ago by
Jiang, Mike
★ 1.3k • written 8.6 years ago by
clevy
▴ 10
8 results • Page
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
Answer: Microarray Limma Model fitting and DEG
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