Bioconductor Cytof

Showing : cytof • reset

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703

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cytofWorkflow cytof diffcyt

3.3 years ago achaillon • 0

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1.4k

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Cytofast FlowSom CyTOF fcs files

3.5 years ago domenico.somma • 0

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1.0k

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deseq2 mass cytometry CyTOF

updated 3.5 years ago by Michael Love 41k • written 3.5 years ago by mikhael.manurung ▴ 270

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618

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batch effect cytof

4.1 years ago mikhael.manurung ▴ 270

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1.6k

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Cydar CyTOF normalization

updated 4.6 years ago by Aaron Lun ★ 28k • written 4.6 years ago by ghogg • 0

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903

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cydar CyTOF

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by mikhael.manurung ▴ 270

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1.3k

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cytofkit cytof write.csv output

updated 7.5 years ago by chen_hao ▴ 30 • written 7.5 years ago by cjackson13 • 0

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2.7k

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flowCore flowcore CyToF Rtsne

updated 8.7 years ago by Jiang, Mike ★ 1.3k • written 8.7 years ago by clevy ▴ 10

8 results • Page 1 of 1

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Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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Popular Question to James W. MacDonald 65k