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cytoml
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FCS3.2 reading
flowWorkspace
flowCore
CytoML
updated 4 weeks ago by
SamGG
▴ 350 • written 9 weeks ago by
jarod
▴ 30
0
votes
0
replies
502
views
CytoML: gatingset_to_flowjo() "Could not find files for the given pattern(s)" error
CytoML
21 months ago
nmchavez
• 0
0
votes
0
replies
537
views
flowjo_to_gatingset() subset samples issue
CytoML
24 months ago
stephenfchristy
• 0
0
votes
0
replies
867
views
[CytoML/ggcyto] y-axis density plot: low cell count numbers
CytoML
ggcyto
cytoml
2.1 years ago
FL
• 0
0
votes
0
replies
651
views
flowjo_to_gatingset function error
CytoML
3.3 years ago
Iman
• 0
0
votes
2
replies
955
views
Add ticks to scale_x_flowjo_biexp()?
R
CytoML
ggycto
updated 3.4 years ago by
Jiang, Mike
★ 1.3k • written 3.4 years ago by
Marissa
• 0
0
votes
2
replies
795
views
cytobank_to_gatingset path too long Error
CytoML
cytobank_to_gatingset
3.7 years ago
km_sch2002
• 0
7 results • Page
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Votes
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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